View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4294_low_13 (Length: 366)
Name: NF4294_low_13
Description: NF4294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4294_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 349
Target Start/End: Original strand, 22041028 - 22041357
Alignment:
| Q |
19 |
gtttatggaccacaacatatatagtaagttccactttttggctttcat--agtcacagaacaaataattgtaagttcctttcacttaaatgaaacacatt |
116 |
Q |
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| T |
22041028 |
gtttatggaccacaacatatataggaagttccactttttggctttcatctaatcacagaacaaataattgtaagctcctttcacttaa-tgaaacacatt |
22041126 |
T |
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| Q |
117 |
ttggttttcatctagtcccataacaaataattgtaagctcctttcgtttccaccttttggctatatcaaacaagtaagttctttaattaacataaataaa |
216 |
Q |
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| T |
22041127 |
ttggttttcatgtagtcccataacaaataattgtaagctcctttcgtttccaccttttggctatatcaaacaagtaagttctttaattaacataaataaa |
22041226 |
T |
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| Q |
217 |
tgtgcagttttcttatggattttccattccacttctctagagtttcannnnnnnnnnncttctctaatttgttgctaccgcttaagtgattgaaattagt |
316 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
22041227 |
tgtgcagttttcttatggattttccattcaacttctctagagtttca--attttttttcttctctaatttgttgctactacttaagtgattgaaattagt |
22041324 |
T |
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| Q |
317 |
taccgtgttgctctaatttgtttgattgtgttt |
349 |
Q |
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| T |
22041325 |
tgccgtgttgctctaatttgattcatcgtgttt |
22041357 |
T |
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