View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4294_low_15 (Length: 310)
Name: NF4294_low_15
Description: NF4294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4294_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 1459209 - 1459500
Alignment:
| Q |
1 |
tgattttgttgtttgttattaggaacgggttccaatagaagaagtgtttgatcatctgaaatgttcaagacaaggtctgacatcagaggaaggagccagc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1459209 |
tgattttgttgtttgttattaggaacgggttccaatagaagaagtgtttgatcatctaaaatgttcaagacaaggtctgacatcagaggaaggagccagc |
1459308 |
T |
|
| Q |
101 |
aggctacaagtctttggaccaaacaaactggaagagaaaagtgagaacaagtttttgaagtttttaggttttatgtggaaccctttgtcatgggttatgg |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1459309 |
aggcttcaagtctttggaccaaacaaactggaagagaaaagtgagaacaagtttttgaagtttttaggttttatgtggaaccctttgtcatgggttatgg |
1459408 |
T |
|
| Q |
201 |
aagctgctgctattatggccattgctttggctaatggtgatggaaggcctcctgattggcaagactttgttggaatcattgctctcttggtc |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1459409 |
aagctgctgctattatggccattgctttggctaatggtgatggaaggcctcctgattggcaagactttgtcggaatcattgctctcttggtc |
1459500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 20 - 283
Target Start/End: Complemental strand, 1499515 - 1499252
Alignment:
| Q |
20 |
taggaacgggttccaatagaagaagtgtttgatcatctgaaatgttcaagacaaggtctgacatcagaggaaggagccagcaggctacaagtctttggac |
119 |
Q |
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||||||||| |||||||||| || |||||||| || || ||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||| |
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| T |
1499515 |
taggaacggattccaatagacgaggtgtttgagcagctaaaatgttcaagacaaggtctgacatcagaagaaggagccaacaggcttcaagtctttggac |
1499416 |
T |
|
| Q |
120 |
caaacaaactggaagagaaaagtgagaacaagtttttgaagtttttaggttttatgtggaaccctttgtcatgggttatggaagctgctgctattatggc |
219 |
Q |
| |
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|||||||| |||||||||||| |||| |||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| ||||| |
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| T |
1499415 |
caaacaaattggaagagaaaaaagagagcaagtttttgaagtttttgggttttatgtggaatcctttatcatgggttatggaagctgctgctatcatggc |
1499316 |
T |
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| Q |
220 |
cattgctttggctaatggtgatggaaggcctcctgattggcaagactttgttggaatcattgct |
283 |
Q |
| |
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|||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
1499315 |
cattgctttggctaatggaagtggaaggccccctgattggcaagactttgtcggaatcattgct |
1499252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 26787079 - 26787363
Alignment:
| Q |
1 |
tgattttgttgtttgttattaggaacgggttccaatagaagaagtgtttgatcatctgaaatgttcaagacaaggtctgacatcagaggaaggagccagc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| | ||||||||||| ||||||||||||||||| ||||||||| ||||||| ||||||||||| || |
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| T |
26787079 |
tgattttgttgtttgttattaggatcgggttccgttggaagaagtgttcgatcatctgaaatgttcgagacaaggtttgacatcggaggaaggagcgagt |
26787178 |
T |
|
| Q |
101 |
aggctacaagtctttggaccaaacaaactggaagagaaaagtgagaacaagtttttgaagtttttaggttttatgtggaaccctttgtcatgggttatgg |
200 |
Q |
| |
|
||||| |||| ||||||| |||||||| |||||||||| |||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||| |
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|
| T |
26787179 |
aggcttgaagtatttggacataacaaactcgaagagaaaactgagaacaagtttttgaaatttttgggttttatgtggaaccctttatcatgggttatgg |
26787278 |
T |
|
| Q |
201 |
aagctgctgctattatggccattgctttggctaatggtgatggaaggcctcctgattggcaagactttgttggaatcattgctct |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26787279 |
aagctgctgctattatggccattgctttggctaatggtgatggaaggccccctgattggcaagactttgttggaatcattgctct |
26787363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 975688 - 975615
Alignment:
| Q |
158 |
aagtttttaggttttatgtggaaccctttgtcatgggttatggaagctgctgctattatggccattgctttggc |
231 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
975688 |
aagtttttagggtttatgtggaatcctttgtcatgggttatggaagctgctgctatcatggccattgctatggc |
975615 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 6e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 21 - 291
Target Start/End: Original strand, 50273215 - 50273485
Alignment:
| Q |
21 |
aggaacgggttccaatagaagaagtgtttgatcatctgaaatgttcaagacaaggtctgacatcagaggaaggagccagcaggctacaagtctttggacc |
120 |
Q |
| |
|
||||||| ||||| |||| |||||||| || || ||||||||||||||| |||| | || ||||| |||||||||| |||||| ||||| ||||| || |
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| T |
50273215 |
aggaacgaattccagtagaggaagtgttcgagcaactgaaatgttcaagagcaggtttaacctcagacgaaggagccaacaggcttcaagtgtttggtcc |
50273314 |
T |
|
| Q |
121 |
aaacaaactggaagagaaaagtgagaacaagtttttgaagtttttaggttttatgtggaaccctttgtcatgggttatggaagctgctgctattatggcc |
220 |
Q |
| |
|
||||||| ||||||||||||| || | ||||||||||||||| ||||| ||||||||||| || || ||||||||||||||||||||||||||||||||| |
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| T |
50273315 |
aaacaaattggaagagaaaagggaaagcaagtttttgaagttcttaggatttatgtggaatccattatcatgggttatggaagctgctgctattatggcc |
50273414 |
T |
|
| Q |
221 |
attgctttggctaatggtgatggaaggcctcctgattggcaagactttgttggaatcattgctctcttggt |
291 |
Q |
| |
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||||||||||||||||| |||||| |||||||||||||| || |||||||| |||||| |||| ||||| |
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| T |
50273415 |
attgctttggctaatggcagtggaagacctcctgattggcaggattttgttggtatcatttctcttttggt |
50273485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 148 - 237
Target Start/End: Original strand, 3151591 - 3151680
Alignment:
| Q |
148 |
caagtttttgaagtttttaggttttatgtggaaccctttgtcatgggttatggaagctgctgctattatggccattgctttggctaatgg |
237 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| ||| | |||||||| ||||||||||| || || ||||| ||||||||||| ||||| |
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|
| T |
3151591 |
caagtttttgaagtttttgggatttatgtggaatcctctttcatgggtgatggaagctgcagcaatcatggctattgctttggccaatgg |
3151680 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 270
Target Start/End: Complemental strand, 53077948 - 53077851
Alignment:
| Q |
173 |
atgtggaaccctttgtcatgggttatggaagctgctgctattatggccattgctttggctaatggtgatggaaggcctcctgattggcaagactttgt |
270 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||| ||| | ||||| |||| | | || |||||| |||||| ||| || ||||||||||| ||||| |
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| T |
53077948 |
atgtggaatcctttgtcatgggtcatggaagctgcggctttgatggcaattggtcttgcaaatggtaatggaaagcccccggattggcaagattttgt |
53077851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 225
Target Start/End: Original strand, 44529633 - 44529715
Alignment:
| Q |
143 |
gagaacaagtttttgaagtttttaggttttatgtggaaccctttgtcatgggttatggaagctgctgctattatggccattgc |
225 |
Q |
| |
|
|||| |||||||||||| ||| | || ||||||||||| ||| | || ||||||||||| || |||||||| ||||| ||||| |
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|
| T |
44529633 |
gagagcaagtttttgaaatttctgggatttatgtggaatcctctttcttgggttatggaggcagctgctataatggctattgc |
44529715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 276
Target Start/End: Original strand, 15866270 - 15866397
Alignment:
| Q |
149 |
aagtttttgaagtttttaggttttatgtggaaccctttgtcatgggttatggaagctgctgctattatggccattgctttggctaatggtgatggaaggc |
248 |
Q |
| |
|
|||||| | |||||| | || ||||||||||| || || |||||||| ||||||||||| ||| | ||||| |||||| | || || || || ||| || |
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| T |
15866270 |
aagtttctcaagtttcttgggtttatgtggaatccattatcatgggtgatggaagctgcagctttaatggcaattgctcttgcgaacggagaaggacagc |
15866369 |
T |
|
| Q |
249 |
ctcctgattggcaagactttgttggaat |
276 |
Q |
| |
|
|||| ||||||||||| ||||| ||||| |
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|
| T |
15866370 |
ctccagattggcaagattttgtgggaat |
15866397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 237
Target Start/End: Complemental strand, 21983281 - 21983202
Alignment:
| Q |
158 |
aagtttttaggttttatgtggaaccctttgtcatgggttatggaagctgctgctattatggccattgctttggctaatgg |
237 |
Q |
| |
|
|||||||| |||||||||||||| || || |||||||| ||||| || ||||| || |||||||||| ||||| ||||| |
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|
| T |
21983281 |
aagtttttgggttttatgtggaatccattatcatgggtcatggaggcagctgcaatcatggccattgtattggccaatgg |
21983202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 45200238 - 45200171
Alignment:
| Q |
170 |
tttatgtggaaccctttgtcatgggttatggaagctgctgctattatggccattgctttggctaatgg |
237 |
Q |
| |
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||||||||||| || | |||||||| ||||||||||||||||| ||||| ||||| ||||| ||||| |
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|
| T |
45200238 |
tttatgtggaatcccctctcatgggtcatggaagctgctgctatcatggctattgcattggcaaatgg |
45200171 |
T |
|
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