View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4294_low_18 (Length: 297)

Name: NF4294_low_18
Description: NF4294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4294_low_18
NF4294_low_18
[»] chr2 (2 HSPs)
chr2 (1-282)||(44741970-44742251)
chr2 (217-279)||(17303530-17303592)
[»] chr3 (6 HSPs)
chr3 (17-280)||(26373410-26373673)
chr3 (213-277)||(30499035-30499099)
chr3 (217-280)||(557578-557641)
chr3 (213-280)||(9192345-9192412)
chr3 (213-277)||(8819397-8819461)
chr3 (219-280)||(42433444-42433504)
[»] scaffold0042 (1 HSPs)
scaffold0042 (17-280)||(30934-31197)
[»] chr5 (4 HSPs)
chr5 (114-280)||(4157476-4157642)
chr5 (213-282)||(5215101-5215170)
chr5 (213-275)||(35193240-35193302)
chr5 (133-182)||(17589795-17589844)
[»] chr1 (2 HSPs)
chr1 (213-277)||(8881458-8881522)
chr1 (215-253)||(48563419-48563457)
[»] chr4 (3 HSPs)
chr4 (213-280)||(23096530-23096597)
chr4 (132-183)||(12328295-12328346)
chr4 (213-280)||(12328412-12328479)
[»] scaffold0445 (1 HSPs)
scaffold0445 (213-282)||(10391-10460)
[»] scaffold0031 (1 HSPs)
scaffold0031 (138-183)||(96085-96130)


Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 44741970 - 44742251
Alignment:
Q  1 ttggaagtaaatttaaaaaccccaaagggtatggttctttttaacccgtaagggctgtttggttactaacgtgtgttgga-tcatcccttgatcagaatt 99  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |  ||    
T  44741970 ttggaagtaaatttaaaaaccccaaagggtatggttctttt-aacccgtaagggctgtttggttactaacgtgtgttggactcatcccttgatctgggtt 44742068  T
Q  100 caagcgcgtttggaaccgtttgtgttggtggtctgtgcttgattctcttatattctaggtctgttgagatctgcatgtctcaaggcgttaagattgcttt 199  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44742069 caagcgcgtctggaaccgtttgtgttggtggtccgtgcttgattctcttatattctaggtctgttgagatctgcatgtctcaaggcgttaagattgcttt 44742168  T
Q  200 ctcttcggtattcttatgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatactg 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44742169 ctcttcggtattcttatgctcgaaagagctattatgcatgttgttttgttcaggaggttgctggtacgtggatcttgatactg 44742251  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 279
Target Start/End: Original strand, 17303530 - 17303592
Alignment:
Q  217 gctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgata 279  Q
    |||||||||||||||||| | || || |||||||||| | ||| |||||||||||||| ||||    
T  17303530 gctcgaaagagctattatacctgctgctttgttcagggggttgttggtacgtggatctcgata 17303592  T

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Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 280
Target Start/End: Complemental strand, 26373673 - 26373410
Alignment:
Q  17 aaaccccaaagggtatggttctttttaacccgtaagggctgtttggttactaacgtgtgttgga-tcatcccttgatcagaattcaagcgcgtttggaac 115  Q
    |||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||| | ||| |  ||||  | ||| || |||    
T  26373673 aaacccgaaagggtatggttcttta-aacccgtaagggctgtttggttactaacgtgtgttggactcatcccataatctgggttcagacacgtctgaaac 26373575  T
Q  116 cgtttgtgttggtggtctgtgcttgattctcttatattctaggtctgttgagatctgcatgtctcaaggcgttaagattgctttctcttcggtattctta 215  Q
     | ||||||||||||||||||||||||||| | |||||  || |||||||||||||||| |||||||||||| |||| ||||| |||| |||||   |||    
T  26373574 tggttgtgttggtggtctgtgcttgattctatgatatttcagttctgttgagatctgcaggtctcaaggcgtcaagactgcttcctctccggtaccgtta 26373475  T
Q  216 tgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatac 280  Q
    ||||||||||||||||| ||| |||||||||||||| ||| ||||||||||||||||||||||||    
T  26373474 tgctcgaaagagctattttgcttgttgttttgttcaagaggttgctggtacgtggatcttgatac 26373410  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 30499099 - 30499035
Alignment:
Q  213 ttatgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttga 277  Q
    |||||||||||||||||| ||||||||||| |||||| ||| | |||||||||| ||||||||||    
T  30499099 ttatgctcgaaagagctactatgcatgttgctttgttgagggggttgctggtacttggatcttga 30499035  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 280
Target Start/End: Original strand, 557578 - 557641
Alignment:
Q  217 gctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatac 280  Q
    |||||||||||||||||| | || ||||||||||||| | ||| ||||||||||||||||||||    
T  557578 gctcgaaagagctattatacctgatgttttgttcagggggttgttggtacgtggatcttgatac 557641  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 280
Target Start/End: Complemental strand, 9192412 - 9192345
Alignment:
Q  213 ttatgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatac 280  Q
    |||||||||||||||||||||| | |||||||||||||| | |  ||||||||||||||| |||||||    
T  9192412 ttatgctcgaaagagctattattcttgttgttttgttcatggggctgctggtacgtggattttgatac 9192345  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 8819461 - 8819397
Alignment:
Q  213 ttatgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttga 277  Q
    |||||||| ||||||||| ||||| || || |||||||||  | |||||||||||||||||||||    
T  8819461 ttatgctcaaaagagctactatgcctgctgatttgttcagtgggttgctggtacgtggatcttga 8819397  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 280
Target Start/End: Complemental strand, 42433504 - 42433444
Alignment:
Q  219 tcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatac 280  Q
    |||||||||||||||| | || || |||||||||| ||| |||||||||||||||| |||||    
T  42433504 tcgaaagagctattatacctgctgctttgttcaggggtt-gctggtacgtggatctcgatac 42433444  T

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Target: scaffold0042 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 17 - 280
Target Start/End: Original strand, 30934 - 31197
Alignment:
Q  17 aaaccccaaagggtatggttctttttaacccgtaagggctgtttggttactaacgtgtgttgga-tcatcccttgatcagaattcaagcgcgtttggaac 115  Q
    |||||| |||||||||||||||||  ||||  |||||| |||||||||||||||||||||| || ||||||| ||||| || ||||  | ||| || |||    
T  30934 aaacccgaaagggtatggttcttta-aacctataagggttgtttggttactaacgtgtgttagactcatcccatgatctgagttcagacacgtctgaaac 31032  T
Q  116 cgtttgtgttggtggtctgtgcttgattctcttatattctaggtctgttgagatctgcatgtctcaaggcgttaagattgctttctcttcggtattctta 215  Q
     | ||||||||||||| ||||||||||||| | |||||  |||||||||||||| |||| |||||||||||| |||| ||||| ||||  ||||   |||    
T  31033 tggttgtgttggtggtttgtgcttgattctatgatatttcaggtctgttgagatatgcaggtctcaaggcgtcaagactgcttcctctctggtaccgtta 31132  T
Q  216 tgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatac 280  Q
    ||||||||||||||||| ||| || ||||||||||||||| ||||||||||||||||||||||||    
T  31133 tgctcgaaagagctattttgcctggtgttttgttcaggaggttgctggtacgtggatcttgatac 31197  T

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Target: chr5 (Bit Score: 79; Significance: 6e-37; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 114 - 280
Target Start/End: Original strand, 4157476 - 4157642
Alignment:
Q  114 accgtttgtgttggtggtctgtgcttgattctcttatattctaggtctgttgagatctgcatgtctcaaggcgttaagattgctttctcttcggtattct 213  Q
    |||| ||||||||||||||||||||||||||| | |||||| |||||||||| |||||||| |||||||||||| |||| | ||| |||| ||||||  |    
T  4157476 accggttgtgttggtggtctgtgcttgattctttgatattccaggtctgttgtgatctgcaggtctcaaggcgtcaagactacttcctctccggtatcgt 4157575  T
Q  214 tatgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatac 280  Q
    |||||| |||||||||||| ||| |  | |||||||||||||  ||||||| |||||||||||||||    
T  4157576 tatgctggaaagagctattttgcctactattttgttcaggaggctgctggtgcgtggatcttgatac 4157642  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 5215101 - 5215170
Alignment:
Q  213 ttatgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatactg 282  Q
    |||||||||||||||||| ||||||||||| |||||||| | | ||| ||||||||||||||||| ||||    
T  5215101 ttatgctcgaaagagctactatgcatgttgctttgttcaaggggttgttggtacgtggatcttgaaactg 5215170  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 213 - 275
Target Start/End: Original strand, 35193240 - 35193302
Alignment:
Q  213 ttatgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatctt 275  Q
    |||||||||||||||||||||||| | ||| |||||||||||| ||| ||||||| |||||||    
T  35193240 ttatgctcgaaagagctattatgcctattggtttgttcaggaggttgttggtacgcggatctt 35193302  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 17589844 - 17589795
Alignment:
Q  133 tgtgcttgattctcttatattctaggtctgttgagatctgcatgtctcaa 182  Q
    |||| |||||||||| || ||| ||||||||||||||||||| |||||||    
T  17589844 tgtggttgattctctgatgttccaggtctgttgagatctgcaggtctcaa 17589795  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 8881522 - 8881458
Alignment:
Q  213 ttatgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttga 277  Q
    |||||||||||| ||||||||||| ||||||||| || ||||| |||||||||||||||||||||    
T  8881522 ttatgctcgaaatagctattatgcctgttgtttttttaaggaggttgctggtacgtggatcttga 8881458  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 48563419 - 48563457
Alignment:
Q  215 atgctcgaaagagctattatgcatgttgttttgttcagg 253  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  48563419 atgctcgaaagagctattatgcttgttgttttgttcagg 48563457  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 213 - 280
Target Start/End: Complemental strand, 23096597 - 23096530
Alignment:
Q  213 ttatgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatac 280  Q
    |||||||||||||||||||||||||||||||||| |||||  |  ||||||||||||||| |||||||    
T  23096597 ttatgctcgaaagagctattatgcatgttgttttattcagcgggatgctggtacgtggattttgatac 23096530  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 183
Target Start/End: Original strand, 12328295 - 12328346
Alignment:
Q  132 ctgtgcttgattctcttatattctaggtctgttgagatctgcatgtctcaag 183  Q
    |||||||||||||||| ||||||||||||||||||||||| || ||||||||    
T  12328295 ctgtgcttgattctctaatattctaggtctgttgagatctacaagtctcaag 12328346  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 280
Target Start/End: Original strand, 12328412 - 12328479
Alignment:
Q  213 ttatgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatac 280  Q
    ||||||||||||||||||||||||  | ||| ||||||||| | ||||||||| ||||||| ||||||    
T  12328412 ttatgctcgaaagagctattatgccggctgtgttgttcagggggttgctggtatgtggatcgtgatac 12328479  T

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Target: scaffold0445 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 10391 - 10460
Alignment:
Q  213 ttatgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatactg 282  Q
    |||||||| ||||||||  ||||| || || |||||||||| | ||||||||||||||||||||| ||||    
T  10391 ttatgctcaaaagagcttctatgcctgctgctttgttcagggggttgctggtacgtggatcttgaaactg 10460  T

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Target: scaffold0031 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 96130 - 96085
Alignment:
Q  138 ttgattctcttatattctaggtctgttgagatctgcatgtctcaag 183  Q
    |||||||||| || ||| || |||||||||||||||||||||||||    
T  96130 ttgattctctgatgttccagatctgttgagatctgcatgtctcaag 96085  T

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