View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4294_low_20 (Length: 282)
Name: NF4294_low_20
Description: NF4294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4294_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 1815344 - 1815603
Alignment:
| Q |
1 |
cgctgtgaccttgatccagtattaatagccaacaatgtaaggtgnnnnnnngtgtcccaaaatgactgtaattttttctgttgactttactgttatgata |
100 |
Q |
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| T |
1815344 |
cgctgtgaccttgatccagtattaatagccaacaatgtaaggtgaaaaaaagtgtcccaaaatgactgtaattttttctgttgactttactgttatgata |
1815443 |
T |
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| Q |
101 |
gttgtaaatacacccatacctgataagcttaatttgctgaaaatgttattttcttttttcatttatagcttctccttaatttatgtaaaataaccaaata |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1815444 |
gttgtaaatacacccatacttgataagcttaatttgctaaaaaatttattttcttttttcatttatagcttctccttaatttgtgtaaaataaccaaatg |
1815543 |
T |
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| Q |
201 |
tatcactcataatgggacggagggaatggtactttagtatgattgaatggaaggaaagca |
260 |
Q |
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| T |
1815544 |
tatcactcataatgggacggagggaatggtactttagtatgattgaatggaaggaaagca |
1815603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 24564925 - 24564983
Alignment:
| Q |
157 |
tttcatttatagcttctccttaatttatgtaaaataaccaaatatatcactcataatgg |
215 |
Q |
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| T |
24564925 |
tttcatttatagtttctccttaatttatgtaaaataaccaaatgcaacactcataatgg |
24564983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 225
Target Start/End: Original strand, 2386040 - 2386143
Alignment:
| Q |
123 |
ataagcttaatttgctgaaaatgttattttcttt-tttcatttatagcttctccttaatttatgtaaaataaccaaatatatcactcataatgggacgga |
221 |
Q |
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||||| |||||||| | ||| ||||||| ||||| |||||||||||| ||||||||| | | ||| ||||||||| || | |||||| ||||||| ||| |
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| T |
2386040 |
ataaggttaatttggtaaaattgttattctctttctttcatttatagtttctccttagtctgtgtgaaataaccagatgtgacactcacaatgggaggga |
2386139 |
T |
|
| Q |
222 |
ggga |
225 |
Q |
| |
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|||| |
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| T |
2386140 |
ggga |
2386143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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