View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4294_low_24 (Length: 265)
Name: NF4294_low_24
Description: NF4294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4294_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 254
Target Start/End: Original strand, 31049989 - 31050226
Alignment:
| Q |
17 |
ttgatttggtcctctagatgagaatgaagccataactggagctggttttcttcgatataaagtttttggctgtgacattcttattttacttaccgacttt |
116 |
Q |
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| T |
31049989 |
ttgatttggtcctctagatgagaatgaagccataactggagctggttttcttcgatatgaagtttttggctgtgacattctaattttaattaccgacttt |
31050088 |
T |
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| Q |
117 |
attgtatccctgcaaaataaatttttattttgtcacgtatttttaaaagcttgtcatcacaagggtatacataatttcactaatagttaataattacgtg |
216 |
Q |
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| T |
31050089 |
attgtatccctgcaaaataaatttttattttgtcacgtatttttaaaagcttgtcatcacaagggtatacataatttcactaatagttaataattacgtg |
31050188 |
T |
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| Q |
217 |
gtacttatgcctatactatgtcctcttgttaattgatg |
254 |
Q |
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| T |
31050189 |
gtacttatgcctatactatgtcctcttgttaattgatg |
31050226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 31162885 - 31162937
Alignment:
| Q |
17 |
ttgatttggtcctctagatgagaatgaagccataactggagctggttttcttc |
69 |
Q |
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| T |
31162885 |
ttgatttggtcctctagatgagaatgaagccataactggagctggctttcttc |
31162937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 31145064 - 31145113
Alignment:
| Q |
20 |
atttggtcctctagatgagaatgaagccataactggagctggttttcttc |
69 |
Q |
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| T |
31145064 |
atttggtcctctagatgagaatgaagccataactggagctggctttcttc |
31145113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 31062475 - 31062527
Alignment:
| Q |
17 |
ttgatttggtcctctagatgagaatgaagccataactggagctggttttcttc |
69 |
Q |
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| T |
31062475 |
ttgatttggacctctagatgagaatgaagccataactggagctggctttcttc |
31062527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 31202746 - 31202697
Alignment:
| Q |
20 |
atttggtcctctagatgagaatgaagccataactggagctggttttcttc |
69 |
Q |
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| T |
31202746 |
atttggtcctctagatgagaatgaagccattactggagctggctttcttc |
31202697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 31107484 - 31107568
Alignment:
| Q |
20 |
atttggtcctctagatgagaatgaagccataactggagctggttttcttcgatataaagtttttggctgtgacattcttatttta |
104 |
Q |
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| T |
31107484 |
atttggtcctctagaagagtaggaagccataactggagctggctttcttctattcaaagtttttgctggtgacattcttagttta |
31107568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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