View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4294_low_26 (Length: 259)
Name: NF4294_low_26
Description: NF4294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4294_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 38940035 - 38939809
Alignment:
| Q |
16 |
acaaaagaaaacgaagtaatgatgatgaatgttaccgtagagattcatcatcatcaacaaggattcacggaaaacgaaaaggaaaatagcgataacgaat |
115 |
Q |
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| T |
38940035 |
acaaaagaaaacgaagtaatgatgatgaatgttaccgtagagattcatcatcatcaacaaggattcacggaaaacgaaaaggaaaatagcgataacgaat |
38939936 |
T |
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| Q |
116 |
gttacctgaaaatcgctgaaagctgtaaccgtttttggatgagatgaagcaacggtgattgaaggaattctcgatgaatgttgaagaagtgggaacagag |
215 |
Q |
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| T |
38939935 |
gttacctgaaaatcgctgaaagctgtaaccgtttttggatgagatgaagcaacggtgattgaaggaattctcgatgaatgttgaagaagtgggaacagag |
38939836 |
T |
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| Q |
216 |
aactttatatatcccactggtgtaact |
242 |
Q |
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| T |
38939835 |
aactttatatatcccactggtgtaact |
38939809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 23 - 242
Target Start/End: Original strand, 55759652 - 55759864
Alignment:
| Q |
23 |
aaaacgaagtaatgatgatgaatgttaccgtagagattcatcatcatcaacaaggattcacggaaaacgaaaaggaaaatagcgataacgaatgttacct |
122 |
Q |
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| T |
55759652 |
aaaacgaaataatgatgatgaatgttaccgtaaagattcatcatcatcaataaggagtca-tgaaaacgaaaa-gcaaatagcgataatgaatgttacca |
55759749 |
T |
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| Q |
123 |
gaaaatcgctgaaa--gctgtaaccgttt-ttggatgagatgaagcaacggtgattgaaggaattctcgatgaatgttgaagaagtgggaacagagaact |
219 |
Q |
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| T |
55759750 |
gaaaa----tgaaaacactgaaaccgtttcttggatgagagaaagcaa---tgcttgaagg-tttcacgatgaatgttgaagaagagggaactgagaact |
55759841 |
T |
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| Q |
220 |
ttatatatcccactggtgtaact |
242 |
Q |
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| T |
55759842 |
ttatatatcccactggtgtaact |
55759864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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