View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4294_low_3 (Length: 594)
Name: NF4294_low_3
Description: NF4294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4294_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 23 - 297
Target Start/End: Original strand, 31631943 - 31632217
Alignment:
| Q |
23 |
ttacggtaaaagattaaatgtatagaagattacaaaatgatcttccacaacatgcccaaattgcataagaaataaaatatacaattcaatagccttctgc |
122 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31631943 |
ttaccgtaaaagattaaatgtatagaagattacaaaatgatcttccacaacatgcccaaattgcataagaaataaaatatacaattcaatagccttctgc |
31632042 |
T |
|
| Q |
123 |
ataattacagtggaacagtgtacaagagcaagactatattgatcataattaagttcaattcaatttgatttctctactaattgagcacatctaacaatct |
222 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
31632043 |
ataattacagtggaacagtgcacaagagcaagactatattgatcataattaagttcaattcaatttgatttctctactaatttagtacatctaacaatct |
31632142 |
T |
|
| Q |
223 |
tctggtttctctatttaccctctgcattagtaattcagtaatagtacgtttgttgtatgcattcaaaatttactc |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
31632143 |
tctggtttctctatttaccctctgcattagtaattcagtaatagtatgtttgttgtatgcattcaaaacttactc |
31632217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 303 - 579
Target Start/End: Original strand, 31632280 - 31632564
Alignment:
| Q |
303 |
tttaatgctgcactagtgcttttttgtcacttccttctcgatcattggtttgatcataaactagaaa-caatgatgtgnnnnnnnn-------gttttga |
394 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||| |
|
|
| T |
31632280 |
tttaatgctgcactaatgcttctttgtcacttccttctcgatcattggtttgatcataaactagaaaacaatgatttttttttgtttttttttgttttga |
31632379 |
T |
|
| Q |
395 |
agaaggcaaactagcccaatgaaattggcactgggaagagtcggaacacatctgaaaccaacacaatcagaccaacccaaagggttgaaaacaatgatgt |
494 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
31632380 |
agaaggcaaactagcccaatgaaattggcaccgagaagagtcggaacacatctcaaaccaacaccatcagaccaacccaaagggttgaaaacaatgagga |
31632479 |
T |
|
| Q |
495 |
tgaacactgatctcttgaaaatgagacacaaaaagtttgaaggattcacaaatgtgatttgtgtggcaaataattcacctctctg |
579 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31632480 |
tgaacactggtctcttgaaaatgagacacaaaaagtttgaaggattcacaaatgtgatttgtgtgacaaataattcacctctctg |
31632564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 179 - 257
Target Start/End: Original strand, 31653082 - 31653160
Alignment:
| Q |
179 |
aattcaatttgatttctctactaattgagcacatctaacaatcttctggtttctctatttaccctctgcattagtaatt |
257 |
Q |
| |
|
||||||||||| |||||||| |||| || ||||| | ||| |||||||||||||||||| | |||||||||||||| |
|
|
| T |
31653082 |
aattcaatttgctttctctatgaatttagtacatccagcaaccttctggtttctctatttttctcctgcattagtaatt |
31653160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 426
Target Start/End: Complemental strand, 23745241 - 23745204
Alignment:
| Q |
389 |
ttttgaagaaggcaaactagcccaatgaaattggcact |
426 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
23745241 |
ttttgaagaagccaaactagcccactgaaattggcact |
23745204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University