View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4294_low_34 (Length: 220)

Name: NF4294_low_34

Description: NF4294

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF4294_low_34

[»] chr4 (1 HSPs)

[»] chr6 (1 HSPs)

Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 170; E-Value: 2e-91

Query Start/End: Original strand, 24 - 201

Target Start/End: Original strand, 54154333 - 54154509

Alignment:

Q	24	aaaaggattatctttttctaatacttaatttacgggtaaccataaatacacatgacttcttgatgcaatggtgacaaagaggaagaacacatttttaatt	123	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	54154333	aaaaggattatctttttctaatacttaatttacgggtaaccataaatacacatgacttcttgatgcaatggtgacaaagaggaagaacacatttttaatt	54154432	T

Q	124	aacataaaaacaactacaattgcattattgttaaaagactcttcttgaaaataccaaaactataacaacaaacctgtt	201	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	54154433	aacataaaaacaactacaattgcattattgtt-aaagactcttcttgaaaataccaaaactataacaacaaacctgtt	54154509	T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 33; E-Value: 0.000000001

Query Start/End: Original strand, 138 - 198

Target Start/End: Complemental strand, 1139831 - 1139772

Alignment:

Q	138	tacaattgcattattgttaaaagactcttcttgaaaataccaaaactataacaacaaacct	198	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\| \|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	1139831	tacaattgcattgttgttaaa-gactctttttaaaaatatcaaaactttaacaacaaacct	1139772	T

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