View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4294_low_36 (Length: 204)

Name: NF4294_low_36
Description: NF4294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4294_low_36
NF4294_low_36
[»] chr8 (6 HSPs)
chr8 (1-183)||(23710645-23710831)
chr8 (1-183)||(754011-754197)
chr8 (1-134)||(14822479-14822616)
chr8 (1-183)||(9710369-9710554)
chr8 (1-95)||(9173918-9174016)
chr8 (117-183)||(9173844-9173910)
[»] chr1 (6 HSPs)
chr1 (1-183)||(50515270-50515456)
chr1 (1-183)||(45910523-45910709)
chr1 (1-183)||(44713211-44713397)
chr1 (1-53)||(16768008-16768060)
chr1 (1-42)||(6851379-6851420)
chr1 (1-34)||(10548346-10548379)
[»] chr6 (2 HSPs)
chr6 (1-183)||(18459877-18460067)
chr6 (1-53)||(24133379-24133431)
[»] chr2 (5 HSPs)
chr2 (1-183)||(38619183-38619369)
chr2 (1-183)||(17312640-17312826)
chr2 (1-96)||(9635371-9635470)
chr2 (1-45)||(19991628-19991672)
chr2 (2-40)||(26262701-26262739)
[»] chr7 (2 HSPs)
chr7 (1-180)||(41257474-41257657)
chr7 (1-179)||(19215467-19215649)
[»] chr5 (6 HSPs)
chr5 (1-183)||(13850829-13851015)
chr5 (1-183)||(25761176-25761362)
chr5 (1-183)||(20236288-20236473)
chr5 (1-183)||(38965584-38965769)
chr5 (1-95)||(23352191-23352289)
chr5 (66-183)||(34834010-34834127)
[»] chr3 (5 HSPs)
chr3 (1-183)||(6162161-6162347)
chr3 (1-183)||(52972557-52972744)
chr3 (1-96)||(54586338-54586437)
chr3 (2-54)||(35309892-35309944)
chr3 (2-54)||(11519015-11519067)


Alignment Details
Target: chr8 (Bit Score: 114; Significance: 5e-58; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 23710831 - 23710645
Alignment:
Q  1 tcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccccatt----ttttaggcgatttcctttggatcacgtcatatgatctgtactg 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||| |||||||||||||||| |||||||    
T  23710831 tcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccccattcgttttttaggcgatttccttttgatcacgtcatatgatatgtactg 23710732  T
Q  97 atccgttccggaatattaaatccggactgcattcatgcgttccggatttcgaattccggattgcaacagtacagaaactgtgttcat 183  Q
       |||||| |||||| |||| ||||||||||||||||||||||||||||||||||  || |||| ||||||| ||||| |||||||    
T  23710731 taacgttccagaatatgaaattcggactgcattcatgcgttccggatttcgaattctagactgcaccagtacataaactatgttcat 23710645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 754011 - 754197
Alignment:
Q  1 tcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccccatt----ttttaggcgatttcctttggatcacgtcatatgatctgtactg 96  Q
    |||||||||| | |||||||||||| |||||||||||||||||||||||||||    |||||||||||||||||| |||||| |||||||||||||||||    
T  754011 tcatcatttttgactgaatgcaaagataatgtgtatataaaccttcccccattcgttttttaggcgatttccttttgatcacttcatatgatctgtactg 754110  T
Q  97 atccgttccggaatattaaatccggactgcattcatgcgttccggatttcgaattccggattgcaacagtacagaaactgtgttcat 183  Q
      ||||||| |||||| |||||||||||||||||||||||||| ||||| ||| ||| || |||| ||| |||||||||||||||||    
T  754111 taccgttccagaatatgaaatccggactgcattcatgcgttccagattttgaaatccagagtgcaccagcacagaaactgtgttcat 754197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 14822479 - 14822616
Alignment:
Q  1 tcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccccatt----ttttaggcgatttcctttggatcacgtcatatgatctgtactg 96  Q
    |||||||||| |||| |||| ||||||||||||||||||||||||||||||||    ||||| ||||||||||||  ||||| |||||||||| ||||||    
T  14822479 tcatcatttttgtctaaatgtaaaggtaatgtgtatataaaccttcccccattcgaattttaagcgatttccttttaatcacatcatatgatccgtactg 14822578  T
Q  97 atccgttccggaatattaaatccggactgcattcatgc 134  Q
       | |||||||| ||||||||||||||||||||||||    
T  14822579 gaacattccggaaaattaaatccggactgcattcatgc 14822616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 9710554 - 9710369
Alignment:
Q  1 tcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccc----cattttttaggcgatttcctttggatcacgtcatatgatctgtactg 96  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||    |||||||||||| |||| |||| ||||| |||||||||| || ||||    
T  9710554 tcatcattttcgactgaatgcaaaggtaatgtgtatat-aaccttcccccattcattttttaggcaattttcttttgatcatgtcatatgatatgcactg 9710456  T
Q  97 atccgttccggaatattaaatccggactgcattcatgcgttccggatttcgaattccggattgcaacagtacagaaactgtgttcat 183  Q
      |  || |||| ||   ||||||||||| |||||||| |||| || |||||| ||| || |||| |||||||||||||||||||||    
T  9710455 tactttttcggactacgcaatccggactggattcatgctttccagagttcgaaatccagactgcaccagtacagaaactgtgttcat 9710369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 9174016 - 9173918
Alignment:
Q  1 tcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttccccca----ttttttaggcgatttcctttggatcacgtcatatgatctgtact 95  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||    ||||||||| ||||| |||| |||||||||||||||||||||||    
T  9174016 tcatcatttttgactgaatgcaaaggtaatgtgtatataaaccttcccccattcgttttttaggagattttcttttgatcacgtcatatgatctgtact 9173918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 183
Target Start/End: Complemental strand, 9173910 - 9173844
Alignment:
Q  117 tccggactgcattcatgcgttccggatttcgaattccggattgcaacagtacagaaactgtgttcat 183  Q
    ||||||||| |||||||||||||||||||| || ||| || |||| ||||||||||||| |||||||    
T  9173910 tccggactggattcatgcgttccggatttcaaaatccagactgcaccagtacagaaactatgttcat 9173844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 7e-51; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 50515270 - 50515456
Alignment:
Q  1 tcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccccattt----tttaggcgatttcctttggatcacgtcatatgatctgtactg 96  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||    ||||||||||||||||| ||||||||||||||||||||||||    
T  50515270 tcatcattttcgactgaatgcaaaggtaatgtgtatataaacctttccccatttgttttttaggcgatttccttttgatcacgtcatatgatctgtactg 50515369  T
Q  97 atccgttccggaatattaaatccggactgcattcatgcgttccggatttcgaattccggattgcaacagtacagaaactgtgttcat 183  Q
      || ||||||| |||  ||||||||||| |||||||| ||||||| |||||| |||||| | || ||||||| |||||||||||||    
T  50515370 tacctttccggactatgcaatccggactggattcatgctttccggaattcgaaatccggactacaccagtacaaaaactgtgttcat 50515456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 45910709 - 45910523
Alignment:
Q  1 tcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccccatt----ttttaggcgatttcctttggatcacgtcatatgatctgtactg 96  Q
    |||||||||| | ||||||||||||||||||| |||||||||||| |||||||    ||||||| |||||||||| ||||| ||||||||||||||||||    
T  45910709 tcatcatttttgactgaatgcaaaggtaatgtatatataaacctttccccattcattttttaggtgatttccttttgatcatgtcatatgatctgtactg 45910610  T
Q  97 atccgttccggaatattaaatccggactgcattcatgcgttccggatttcgaattccggattgcaacagtacagaaactgtgttcat 183  Q
      || ||||||| |||  ||||||||||| |||||||||||| ||| |||||| | |||| |||| |||||||||||||||||||||    
T  45910609 tacctttccggactatgcaatccggactggattcatgcgttctggagttcgaaattcggactgcaccagtacagaaactgtgttcat 45910523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 44713397 - 44713211
Alignment:
Q  1 tcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccccatt----ttttaggcgatttcctttggatcacgtcatatgatctgtactg 96  Q
    ||||||||||||  ||||||||||||||||||||||||||||||| |||||||    |||||||||||||||||| ||||||||||||||||||||||||    
T  44713397 tcatcattttcggttgaatgcaaaggtaatgtgtatataaacctttccccattcgttttttaggcgatttccttttgatcacgtcatatgatctgtactg 44713298  T
Q  97 atccgttccggaatattaaatccggactgcattcatgcgttccggatttcgaattccggattgcaacagtacagaaactgtgttcat 183  Q
      || ||||||| |||  |||| |||||  |||||||| ||||||| || ||| |  ||| |||| ||||||| |||||||||||||    
T  44713297 tacctttccggactatgcaatctggactagattcatgcattccggagttagaaattaggactgcaccagtacaaaaactgtgttcat 44713211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 16768060 - 16768008
Alignment:
Q  1 tcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccccatt 53  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||| ||||    
T  16768060 tcatcattctcgactgaatgcaaaggtaatgtgtatataaaccttccctcatt 16768008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 6851420 - 6851379
Alignment:
Q  1 tcatcattttcgtctgaatgcaaaggtaatgtgtatataaac 42  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  6851420 tcatcattttcgtctgactgcaaaggtaatgtgtatataaac 6851379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 10548346 - 10548379
Alignment:
Q  1 tcatcattttcgtctgaatgcaaaggtaatgtgt 34  Q
    |||||||||||| |||||||||||||||||||||    
T  10548346 tcatcattttcgactgaatgcaaaggtaatgtgt 10548379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 18460067 - 18459877
Alignment:
Q  1 tcatcattttcgtctgaatgcaaaggtaatgtgtatataa---accttcccccattt-----tttaggcgatttcctttggatcacgtcatatgatctgt 92  Q
    |||||||||||| |||||||||||||||||||||||||||   ||||||||||||||     ||| ||||||||||||| ||||||||||||||||||||    
T  18460067 tcatcattttcgactgaatgcaaaggtaatgtgtatataataaaccttcccccatttgttttttttggcgatttccttttgatcacgtcatatgatctgt 18459968  T
Q  93 actgatccgttccggaatattaaatccggactgcattcatgcgttccggatttcgaattccggattgcaacagtacagaaactgtgttcat 183  Q
    |||||  ||||| ||||| | |||||||||||||||||||||||||||||||| ||||| ||||| | | |||| ||||||||||||||||    
T  18459967 actgaaacgttctggaatttcaaatccggactgcattcatgcgttccggattttgaatttcggatagaaccagtgcagaaactgtgttcat 18459877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 24133431 - 24133379
Alignment:
Q  1 tcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccccatt 53  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||| ||||    
T  24133431 tcatcattttcgactgaattcaaaggtaatgtgtatataaaccttccctcatt 24133379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 38619183 - 38619369
Alignment:
Q  1 tcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccccattt----tttaggcgatttcctttggatcacgtcatatgatctgtactg 96  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||| ||||    ||||||||||||||||| ||||||||||||||||||||||||    
T  38619183 tcatcattttcgactgaatgcaaaggtaatgtgtatataaacctttcccaatttgttttttaggcgatttccttttgatcacgtcatatgatctgtactg 38619282  T
Q  97 atccgttccggaatattaaatccggactgcattcatgcgttccggatttcgaattccggattgcaacagtacagaaactgtgttcat 183  Q
      || ||||||| |||  ||||||||||| |||||||||||  |||||||||| ||  || |||| |||||||||||||||||||||    
T  38619283 tacctttccggactatgcaatccggactggattcatgcgttatggatttcgaaatctagactgcaccagtacagaaactgtgttcat 38619369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 17312826 - 17312640
Alignment:
Q  1 tcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttccccca----ttttttaggcgatttcctttggatcacgtcatatgatctgtactg 96  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||    |||||||||||||||||||| |||||||||||||||| ||||||     
T  17312826 tcatcattttcgactgaatgcaaaggtaatgtgtatataaaccttctcccattcgttttttaggcgatttccttttgatcacgtcatatgatttgtactc 17312727  T
Q  97 atccgttccggaatattaaatccggactgcattcatgcgttccggatttcgaattccggattgcaacagtacagaaactgtgttcat 183  Q
      ||| ||| || | | ||||||| ||||  |||| | ||| | ||||||||| |||||| |||| |||||||||||||||||||||    
T  17312726 taccggtccagactctgaaatccgaactgggttcacgtgtttcagatttcgaaatccggactgcaccagtacagaaactgtgttcat 17312640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 9635371 - 9635470
Alignment:
Q  1 tcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccccatt----ttttaggcgatttcctttggatcacgtcatatgatctgtactg 96  Q
    ||||||||||| ||||| ||||||| ||||||||||||||||||||||  |||    ||||||||| |||||||| ||||||||||||||||||||||||    
T  9635371 tcatcattttcatctgagtgcaaagataatgtgtatataaaccttcccttatttgaattttaggcgctttccttttgatcacgtcatatgatctgtactg 9635470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 19991672 - 19991628
Alignment:
Q  1 tcatcattttcgtctgaatgcaaaggtaatgtgtatataaacctt 45  Q
    ||||||||||||  |||||||||||||||||||||||||||||||    
T  19991672 tcatcattttcgaatgaatgcaaaggtaatgtgtatataaacctt 19991628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 26262701 - 26262739
Alignment:
Q  2 catcattttcgtctgaatgcaaaggtaatgtgtatataa 40  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  26262701 catcatttttgtctgaatgcaaaggtaatgtgtatataa 26262739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 41257657 - 41257474
Alignment:
Q  1 tcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccccatt----ttttaggcgatttcctttggatcacgtcatatgatctgtactg 96  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||    |||||||||||||||||| |||||||||||||||| |||||||    
T  41257657 tcatcattttcgactgaatgcaaaggtaatgtgtatataaacctttccccattcgttttttaggcgatttccttttgatcacgtcatatgatatgtactg 41257558  T
Q  97 atccgttccggaatattaaatccggactgcattcatgcgttccggatttcgaattccggattgcaacagtacagaaactgtgtt 180  Q
      || || |||| |||  |||| ||| || |||||||||||| |||||||||| |||||| |||| ||||||||||||||||||    
T  41257557 taccttttcggactatgcaatctggattggattcatgcgttctggatttcgaaatccggactgcaccagtacagaaactgtgtt 41257474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 19215467 - 19215649
Alignment:
Q  1 tcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccccatt----ttttaggcgatttcctttggatcacgtcatatgatctgtactg 96  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||    |||||||| |||| |||| ||||||||||||||||||||| ||    
T  19215467 tcatcattttcgactgaatgcaaaggtaatgtgtatataaaccttcccccattagttttttaggcaattttcttttgatcacgtcatatgatctgtattg 19215566  T
Q  97 atccgttccggaatattaaatccggactgcattcatgcgttccggatttcgaattccggattgcaacagtacagaaactgtgt 179  Q
      || ||| ||| |||  ||||||||||| |||||||||||||||| |||||| || | | |||| |||||||||||||||||    
T  19215567 tacctttcaggactatgcaatccggactggattcatgcgttccggagttcgaaatctgaactgcatcagtacagaaactgtgt 19215649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 13851015 - 13850829
Alignment:
Q  1 tcatcattttcgtctgaatgcaaaggtaatgtgtatataaacctt-cccccatt---ttttaggcgatttcctttggatcacgtcatatgatctgtactg 96  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||   |||||||||||||||||| |||||||||||||||| |||||||    
T  13851015 tcatcattttcgactgaatgcaaaggtaatgtgtatataaacctttcccccattcgtttttaggcgatttccttttgatcacgtcatatgatttgtactg 13850916  T
Q  97 atccgttccggaatattaaatccggactgcattcatgcgttccggatttcgaattccggattgcaacagtacagaaactgtgttcat 183  Q
      || ||||||| |||  |||||| |||| |||||||  ||||||| |||| | |||||| |||| |||||||||||||||||||||    
T  13850915 tacctttccggactatgcaatccgcactggattcatggtttccggagttcgtaatccggactgcaccagtacagaaactgtgttcat 13850829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 25761176 - 25761362
Alignment:
Q  1 tcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccccatt----ttttaggcgatttcctttggatcacgtcatatgatctgtactg 96  Q
    |||||||||| | |||||||||||||||||||||||||||||||| |||||||    |||||||| |||| |||| |||||||||||||||| |||||||    
T  25761176 tcatcatttttgactgaatgcaaaggtaatgtgtatataaacctttccccattgattttttaggctattttcttttgatcacgtcatatgatatgtactg 25761275  T
Q  97 atccgttccggaatattaaatccggactgcattcatgcgttccggatttcgaattccggattgcaacagtacagaaactgtgttcat 183  Q
      || ||||||| |||  ||||| ||||| |||||||||||||||| |||||| |||||| |||| ||||||| |||||||||||||    
T  25761276 tacctttccggactatgcaatccagactggattcatgcgttccggagttcgaaatccggactgcaccagtacaaaaactgtgttcat 25761362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 20236473 - 20236288
Alignment:
Q  1 tcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccccat---tttttaggcgatttcctttggatcacgtcatatgatctgtactga 97  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||| ||   ||||||||||||||||||| |||||||||||||||| |||| |      
T  20236473 tcatcattttcgactgaatgctaaggtaatgtgtatataaaccttccccgatttgtttttaggcgatttccttttgatcacgtcatatgatatgtaatct 20236374  T
Q  98 tccgttccggaatattaaatccggactgcattcatgcgttccggatttcgaattccggattgcaacagtacagaaactgtgttcat 183  Q
    || | |||||| | | ||||||| |||| ||||||||||||||||||||||| |||||| |||| ||||||| ||| | |||||||    
T  20236373 tcagatccggactttgaaatccgaactggattcatgcgttccggatttcgaaatccggactgcaccagtacataaattatgttcat 20236288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 38965584 - 38965769
Alignment:
Q  1 tcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttccccca----ttttttaggcgatttcctttggatcacgtcatatgatctgtactg 96  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||| |||    ||||||||||||||| |||| ||||| |||||||||| |||||||    
T  38965584 tcatcattttcgtctgaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcatgtcatatgatatgtactg 38965683  T
Q  97 atccgttccggaatattaaatccggactgcattcatgcgttccggatttcgaattccggattgcaacagtacagaaactgtgttcat 183  Q
    | | ||||||||| |  || |||||||| ||||||||| ||| |||||||||| |||||| | || |||||||||||||||||||||    
T  38965684 a-ctgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatccggactacaccagtacagaaactgtgttcat 38965769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 23352289 - 23352191
Alignment:
Q  1 tcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttccccca----ttttttaggcgatttcctttggatcacgtcatatgatctgtact 95  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||    |||||||||| ||||||||| |||||||||||||||| ||||||    
T  23352289 tcatcattttcgactgaatgcaaaggtaatgtgtatataaacctttccccattcgttttttaggcaatttccttttgatcacgtcatatgatatgtact 23352191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 183
Target Start/End: Complemental strand, 34834127 - 34834010
Alignment:
Q  66 tcctttggatcacgtcatatgatctgtactgatccgttccggaatattaaatccggactgcattcatgcgttccggatttcgaattccggattgcaacag 165  Q
    |||||| |||||||||||||||| ||||| |  || || |||| |||  ||| ||||||| |||||||| ||||  | | |||| ||| || |||| |||    
T  34834127 tccttttgatcacgtcatatgatatgtaccgtaccttttcggactatgcaattcggactggattcatgctttccaaagtccgaaatccagactgcaccag 34834028  T
Q  166 tacagaaactgtgttcat 183  Q
    ||||||||||||||||||    
T  34834027 tacagaaactgtgttcat 34834010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 6162347 - 6162161
Alignment:
Q  1 tcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccccatt----ttttaggcgatttcctttggatcacgtcatatgatctgtactg 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| | |    ||||||||||||  |||| ||||||||  |||||| |  | ||    
T  6162347 tcatcattttcgtctgaatgcaaaggtaatgtgtatataaacctttccctagtcgatttttaggcgattaacttttgatcacgttgtatgatattcattg 6162248  T
Q  97 atccgttccggaatattaaatccggactgcattcatgcgttccggatttcgaattccggattgcaacagtacagaaactgtgttcat 183  Q
      | |||||||||| |||||||||| |||||||||||||||| |||||||| ||||||||  ||| |||| ||||||||||||||||    
T  6162247 tactgttccggaatgttaaatccggtctgcattcatgcgttctggatttcggattccggagagcaccagtgcagaaactgtgttcat 6162161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 52972744 - 52972557
Alignment:
Q  1 tcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttccccca-----ttttttaggcgatttcctttggatcacgtcatatgatctgtact 95  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||      |||||||||||||||| ||| |||||||||||||||| ||||||    
T  52972744 tcatcattttcgactgaatgcaaaggtaatgtgtgtataaaccttccccccattcgttttttaggcgatttctttttgatcacgtcatatgatttgtact 52972645  T
Q  96 gatccgttccggaatattaaatccggactgcattcatgcgttccggatttcgaattccggattgcaacagtacagaaactgtgttcat 183  Q
       |   | |||| | | ||||| |||||| ||||||||||||||||||| ||| || ||| |||| || ||||||||||||||||||    
T  52972644 ctacatgttcggactgtaaaatctggactggattcatgcgttccggattttgaaatctggactgcaccaatacagaaactgtgttcat 52972557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 54586338 - 54586437
Alignment:
Q  1 tcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttccccca----ttttttaggcgatttcctttggatcacgtcatatgatctgtactg 96  Q
    |||||||||||||||||||||||||||| ||||||||||||  ||| ||||    |||||||||| ||||||||| |||||||||||| |||||||||||    
T  54586338 tcatcattttcgtctgaatgcaaaggtagtgtgtatataaaatttctcccattcgttttttaggcaatttccttttgatcacgtcatacgatctgtactg 54586437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 35309944 - 35309892
Alignment:
Q  2 catcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccccattt 54  Q
    ||||||||| ||||||||||||||||||||| |||||||| | |||| |||||    
T  35309944 catcatttttgtctgaatgcaaaggtaatgtttatataaaacctccctcattt 35309892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 11519067 - 11519015
Alignment:
Q  2 catcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccccattt 54  Q
    |||||||||||| || ||||||||||||||| |||||||| | |||| |||||    
T  11519067 catcattttcgtatgtatgcaaaggtaatgtttatataaaacctccctcattt 11519015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University