View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4294_low_4 (Length: 482)
Name: NF4294_low_4
Description: NF4294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4294_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Complemental strand, 6412713 - 6412229
Alignment:
| Q |
1 |
ttttctcctacattaagtggttattagtgggattggaattaacttaatcaacttaccgcaaggagtatatgctccaaagttgctagtattaagtctacat |
100 |
Q |
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| T |
6412713 |
ttttctcctacattaagtggttattagtgggattggaattaacttaatcaacttagcgcaaggagtatatgctccaaagttgctagtattaagtctacat |
6412614 |
T |
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| Q |
101 |
catatgatgttgaggatcatccttgttaggtcatgactagtgatgaaaatttctctaacttatcaatatctcactccaaatttcatttctcatactctct |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6412613 |
catatgatgttgaggatcatccttgttaggtcattactagtgatgaaaatttctctagcttatcaatatctcactcgaaatttcatttctcatactctct |
6412514 |
T |
|
| Q |
201 |
gttcatcttgacttatagttaaccaggttttcaaag--------------------aactttgtcacaaccgcctcctcattattgatgagcgcaacatc |
280 |
Q |
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||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
6412513 |
gttcatcttgacttataattaaccaggttttcaaaggacccgagcttatctttgagaactttgtcacaactgcctcctcattattgatgagcgcaacatc |
6412414 |
T |
|
| Q |
281 |
cgtcacatgaataatgatgctacttgttgtcaatgtggtgctaaaaaagaaacaattatgcatttgcttagagattgttatgacatccaagatgtttggg |
380 |
Q |
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| T |
6412413 |
cgtcacatgaataatgatgctacttgttgtcaatgtggtgctaaaaaagaaacaattatgcatttgcttagagattgttatgacatccaagatgtttggg |
6412314 |
T |
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| Q |
381 |
atccttctattaagtaggagcattgggctaaattatttagcttaaatctatatgatttgttgcatttgaatatctccttaaaaga |
465 |
Q |
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| T |
6412313 |
atccttctattaagtaggagcattgggctaaattattttgcttaaatctatatgatttgttgcatttgaatatctccttaaaaga |
6412229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 358
Target Start/End: Original strand, 38002360 - 38002450
Alignment:
| Q |
268 |
tgagcgcaacatccgtcacatgaataatgatgctacttgttgtcaatgtggtgctaaaaaagaaacaattatgcatttgcttagagattgt |
358 |
Q |
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|||||||| ||||||||||||| | |||||| |||||| | |||||||||| | | ||||||||||||||||| |||||||||||| |
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| T |
38002360 |
tgagcgcagaatccgtcacatgactgatgatgttacttgagtttgatgtggtgcttaggaggaaacaattatgcatttacttagagattgt |
38002450 |
T |
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