View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4294_low_5 (Length: 474)
Name: NF4294_low_5
Description: NF4294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4294_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Complemental strand, 44284839 - 44284382
Alignment:
| Q |
1 |
atagaatgtacaagtcaaaagtaacaagcatgagataaagaatattccatcaattattcttcaaactttacaagaattatactttgccattttgagcatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44284839 |
atagaatgtacaagtcaaaagtaacaagcatgagataaagaatattccatcaattattcttcaaactttacaagaattatactttgccattttgagcatc |
44284740 |
T |
|
| Q |
101 |
aatattcctaactggccccttaaaccattttcttgcatctaatacccaccaaagcattattagacccaaacctacccctaaagcaacaggtgcataattg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44284739 |
aatattcctaactggccccttaaaccattttcttgcatctaatacccaccaaagcattattagacccaaacctacccctaaagcaacaggtgcataattg |
44284640 |
T |
|
| Q |
201 |
aaagtatcccaagtaataggataaagagttggcaaaaggaatacagaacatgtgtaacaaatccatagaaatgctatcaagcaagttggtctgcttgcct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44284639 |
aaagtatcccaagtaataggataaagagttggcaaaaggaatacagaacatgtgtaacaaatccatagaaatgctatcaagcaagttggtctgcttgcct |
44284540 |
T |
|
| Q |
301 |
tgcccaaataaaaaggtccaggcttgaagtttttctcaggcatcaccattcttgcaaagattggaactgcataaccaccaacccatccaattgtggctat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44284539 |
tgcccaaataaaaaggtccaggcttgaagtttttctcaggcatcaccattcttgcaaagattggaactgcataaccaccaacccatccaattgtggctat |
44284440 |
T |
|
| Q |
401 |
tgaagttattgcagtaaaaactacatttaccttcaaaattggtagaccaagaagaatg |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44284439 |
tgaagttattgcagtaaaaactacatttaccttcaaaattggtagaccaagaagaatg |
44284382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University