View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4294_low_8 (Length: 421)
Name: NF4294_low_8
Description: NF4294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4294_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 12 - 406
Target Start/End: Complemental strand, 34239499 - 34239105
Alignment:
| Q |
12 |
aaaggtgagtagtaattcaaatactcgtacaatannnnnnngttttgaacttgaagctataattgatgtgnnnnnnngtaggatgacggcgtactttaac |
111 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34239499 |
aaaggtgagtagtaattcaaatacttgtacaatatttttttgttttgaacttgaagctataattgatgtgtttttttgtaggatgacggcgtactttaac |
34239400 |
T |
|
| Q |
112 |
aagacaggttggcctgcgaatgccccaacaggtgaacaagaaaggaaagatttcatagcttcgcttcacaagcggaagacagaactattcatggaacttg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34239399 |
aagacaggttggcctgcgaatgccccaacaggtgaacaagaaaggaaagatttcatagcttcgcttcacaagcggaagacagaactattcatggaacttg |
34239300 |
T |
|
| Q |
212 |
tggagaaaaaattgttgcctcttcgcccaggtgttgcaaagttggttactatctatctgtatatccatactcattatttataatattttttgttaaacat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34239299 |
tggagaaaaaattgttgcctcttcgcccaggtgttgcaaagttggttactatctatctgtatatccatactcattatttataatattttttgttaaacat |
34239200 |
T |
|
| Q |
312 |
gtaaataaattcatttattgggtgtcacctaatagcttgagttttcgattctattcgtcatgatttaatttagtttcgaaacagctagggtaagt |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
34239199 |
gtaaataaattcatttattgggtgtcacctaatagcttgagttttcgattctattcgtcatgaattaatttagtttcgaaacagctaggggaagt |
34239105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University