View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4295_high_12 (Length: 261)
Name: NF4295_high_12
Description: NF4295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4295_high_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 20 - 261
Target Start/End: Original strand, 30297066 - 30297307
Alignment:
| Q |
20 |
ggagaaatttcaattttctctcttctctaaaacggaaacaaaacaaagaaagagagagccaatgggatcactccacgtgtactctctccttctatctcct |
119 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30297066 |
ggagaaatttcaattttctctgttctctaaaacggaaacaaaacaaagaaagagagagccaatgggatcactccacgtgtactctctccttctatctcct |
30297165 |
T |
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| Q |
120 |
ccaattgtctgttagatcacaagtgtagaaaacgggcaagctgggtggggttcacaacgccttgaaggtgggtcccaccaccctttaacaaccccgtcac |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30297166 |
ccaattgtctgttagatcacaagtgtagaaaacgggcaagctgggtggggttcacaacgccttgaaggtgggtcccaccaccctttaacaaccctgtcac |
30297265 |
T |
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| Q |
220 |
ttccacgtacctttctctctcctccttccgattcttcatctc |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
30297266 |
ttccacgtacctttctctctcctccttccgattcttcatctc |
30297307 |
T |
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