View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4295_high_16 (Length: 240)

Name: NF4295_high_16
Description: NF4295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4295_high_16
NF4295_high_16
[»] chr2 (5 HSPs)
chr2 (120-196)||(9259831-9259907)
chr2 (120-173)||(17140188-17140241)
chr2 (17-60)||(18425873-18425916)
chr2 (122-173)||(31392147-31392198)
chr2 (17-57)||(26656261-26656301)
[»] chr7 (10 HSPs)
chr7 (17-120)||(27387164-27387266)
chr7 (17-60)||(19400195-19400238)
chr7 (120-173)||(39827875-39827928)
chr7 (18-60)||(26493630-26493672)
chr7 (17-56)||(10224106-10224145)
chr7 (18-51)||(9230615-9230648)
chr7 (17-53)||(38575212-38575248)
chr7 (122-173)||(30464777-30464828)
chr7 (17-51)||(11019635-11019669)
chr7 (22-51)||(40703017-40703046)
[»] chr3 (7 HSPs)
chr3 (17-77)||(31989244-31989304)
chr3 (123-173)||(3664045-3664095)
chr3 (22-60)||(51408526-51408564)
chr3 (17-51)||(50091482-50091516)
chr3 (20-77)||(53710616-53710673)
chr3 (17-51)||(1185569-1185603)
chr3 (20-56)||(43586028-43586064)
[»] scaffold0170 (1 HSPs)
scaffold0170 (17-60)||(9291-9334)
[»] scaffold0015 (1 HSPs)
scaffold0015 (17-60)||(214078-214121)
[»] chr8 (5 HSPs)
chr8 (17-60)||(21958727-21958770)
chr8 (22-53)||(34845148-34845179)
chr8 (17-51)||(2826232-2826266)
chr8 (18-51)||(10467967-10468000)
chr8 (19-51)||(28846822-28846854)
[»] chr1 (10 HSPs)
chr1 (17-60)||(170371-170414)
chr1 (17-60)||(41753167-41753210)
chr1 (18-60)||(32885886-32885928)
chr1 (18-60)||(35948896-35948938)
chr1 (18-51)||(30558931-30558964)
chr1 (19-51)||(30055038-30055070)
chr1 (17-58)||(11843816-11843857)
chr1 (18-51)||(25017602-25017635)
chr1 (124-173)||(32984187-32984236)
chr1 (28-60)||(44586077-44586109)
[»] scaffold0019 (1 HSPs)
scaffold0019 (18-60)||(134771-134813)
[»] chr6 (6 HSPs)
chr6 (21-60)||(1296727-1296766)
chr6 (17-51)||(11971174-11971208)
chr6 (18-60)||(24074628-24074670)
chr6 (17-51)||(31028014-31028048)
chr6 (22-51)||(30621385-30621414)
chr6 (18-51)||(32441900-32441933)
[»] chr4 (8 HSPs)
chr4 (17-60)||(42843925-42843968)
chr4 (19-60)||(6255383-6255424)
chr4 (22-53)||(50720059-50720090)
chr4 (17-60)||(55464577-55464620)
chr4 (17-51)||(30111034-30111068)
chr4 (18-51)||(1147715-1147748)
chr4 (18-51)||(53692960-53692993)
chr4 (19-51)||(31002653-31002685)
[»] chr5 (5 HSPs)
chr5 (19-60)||(204067-204108)
chr5 (22-54)||(14317073-14317105)
chr5 (18-51)||(1280797-1280830)
chr5 (22-51)||(2985795-2985824)
chr5 (19-51)||(3055699-3055731)
[»] scaffold0178 (1 HSPs)
scaffold0178 (22-51)||(17960-17989)


Alignment Details
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 196
Target Start/End: Original strand, 9259831 - 9259907
Alignment:
Q  120 tctgtattcaaccgaatccaacaatcatctagtttcttccacataacatcaactatatgccccgtcctttccaagct 196  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  9259831 tctgtattcaaccgaatccaaccatcatctagtttcttccacataacatcaactatccgccccgtcctttccaagct 9259907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 17140188 - 17140241
Alignment:
Q  120 tctgtattcaaccgaatccaacaatcatctagtttcttccacataacatcaact 173  Q
    |||||||||||||||||||||| | | ||| |||||||||||||||||||||||    
T  17140188 tctgtattcaaccgaatccaaccaccctctggtttcttccacataacatcaact 17140241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 18425916 - 18425873
Alignment:
Q  17 acctcttttattttgatttatgactatttatatatattatgtca 60  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||    
T  18425916 acctcttttatttcgatttctgactatttatatatattatgtca 18425873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 31392198 - 31392147
Alignment:
Q  122 tgtattcaaccgaatccaacaatcatctagtttcttccacataacatcaact 173  Q
    |||||||||||||||||||| ||| |||||||| ||| |||||||| |||||    
T  31392198 tgtattcaaccgaatccaaccatcctctagtttattctacataacaacaact 31392147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 26656301 - 26656261
Alignment:
Q  17 acctcttttattttgatttatgactatttatatatattatg 57  Q
    ||||||||||||| ||||||||||||||||| |||| ||||    
T  26656301 acctcttttatttcgatttatgactatttatctatactatg 26656261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 27387266 - 27387164
Alignment:
Q  17 acctcttttattttgatttatgactatttatatatattatgtcaagtgaagttgtgataaannnnnnngcccagactctgtgaaattcctggctccgcca 116  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||  |||||||| ||||||       |||||| |||| ||||||| ||||||||||||    
T  27387266 acctcttctatttcgatttatgactatttatatatattatgtcacatgaagttgcgataaa-ttttttgcccaggctctatgaaatttctggctccgcca 27387168  T
Q  117 ctgt 120  Q
    ||||    
T  27387167 ctgt 27387164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 19400195 - 19400238
Alignment:
Q  17 acctcttttattttgatttatgactatttatatatattatgtca 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  19400195 acctcttttattttgatttatgactatttatatatattatgtca 19400238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 39827875 - 39827928
Alignment:
Q  120 tctgtattcaaccgaatccaacaatcatctagtttcttccacataacatcaact 173  Q
    ||||||||||||||||||||||  || |||||||||||||||||||||||||||    
T  39827875 tctgtattcaaccgaatccaaccgtcctctagtttcttccacataacatcaact 39827928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 26493672 - 26493630
Alignment:
Q  18 cctcttttattttgatttatgactatttatatatattatgtca 60  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  26493672 cctcttttattttgatatatgactatttatatatattatgtca 26493630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 10224106 - 10224145
Alignment:
Q  17 acctcttttattttgatttatgactatttatatatattat 56  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  10224106 acctcttttatttcgatttatgactatttatatatattat 10224145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 9230615 - 9230648
Alignment:
Q  18 cctcttttattttgatttatgactatttatatat 51  Q
    ||||||||||||||||||||||||||||||||||    
T  9230615 cctcttttattttgatttatgactatttatatat 9230648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 38575248 - 38575212
Alignment:
Q  17 acctcttttattttgatttatgactatttatatatat 53  Q
    ||||||||||||| |||||||||||||||||||||||    
T  38575248 acctcttttatttcgatttatgactatttatatatat 38575212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 173
Target Start/End: Original strand, 30464777 - 30464828
Alignment:
Q  122 tgtattcaaccgaatccaacaatcatctagtttcttccacataacatcaact 173  Q
    ||||||||||||||||||||  || | | |||||||||||||||||||||||    
T  30464777 tgtattcaaccgaatccaaccgtcctttggtttcttccacataacatcaact 30464828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 11019669 - 11019635
Alignment:
Q  17 acctcttttattttgatttatgactatttatatat 51  Q
    ||||||||||||||||||||||||| |||||||||    
T  11019669 acctcttttattttgatttatgactgtttatatat 11019635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 51
Target Start/End: Original strand, 40703017 - 40703046
Alignment:
Q  22 ttttattttgatttatgactatttatatat 51  Q
    ||||||||||||||||||||||||||||||    
T  40703017 ttttattttgatttatgactatttatatat 40703046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 31989244 - 31989304
Alignment:
Q  17 acctcttttattttgatttatgactatttatatatattatgtcaagtgaagttgtgataaa 77  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||  |||||||| ||||||    
T  31989244 acctcttttatttcgatttatgattatttatatatattatgtcacatgaagttgcgataaa 31989304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 3664045 - 3664095
Alignment:
Q  123 gtattcaaccgaatccaacaatcatctagtttcttccacataacatcaact 173  Q
    ||||||||||||||||||| ||| ||| |||||||||||||||||||||||    
T  3664045 gtattcaaccgaatccaaccatcctctggtttcttccacataacatcaact 3664095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 51408564 - 51408526
Alignment:
Q  22 ttttattttgatttatgactatttatatatattatgtca 60  Q
    |||||||||||||||||||||||||||||||||||||||    
T  51408564 ttttattttgatttatgactatttatatatattatgtca 51408526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 50091482 - 50091516
Alignment:
Q  17 acctcttttattttgatttatgactatttatatat 51  Q
    |||||||||||||||||||||||||||||||||||    
T  50091482 acctcttttattttgatttatgactatttatatat 50091516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 53710616 - 53710673
Alignment:
Q  20 tcttttattttgatttatgactatttatatatattatgtcaagtgaagttgtgataaa 77  Q
    |||||||||| ||||||||||||||| |||||||||| |||  |||||||| ||||||    
T  53710616 tcttttatttcgatttatgactatttgtatatattatatcacatgaagttgcgataaa 53710673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 1185603 - 1185569
Alignment:
Q  17 acctcttttattttgatttatgactatttatatat 51  Q
    ||||||||||||||||||||||||| |||||||||    
T  1185603 acctcttttattttgatttatgactgtttatatat 1185569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 43586028 - 43586064
Alignment:
Q  20 tcttttattttgatttatgactatttatatatattat 56  Q
    ||||||||||  |||||||||||||||||||||||||    
T  43586028 tcttttatttctatttatgactatttatatatattat 43586064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 9291 - 9334
Alignment:
Q  17 acctcttttattttgatttatgactatttatatatattatgtca 60  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  9291 acctcttttattttaatttatgactatttatatatattatgtca 9334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 214121 - 214078
Alignment:
Q  17 acctcttttattttgatttatgactatttatatatattatgtca 60  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  214121 acctcttttatttcgatttatgactatttatatatattatgtca 214078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 21958727 - 21958770
Alignment:
Q  17 acctcttttattttgatttatgactatttatatatattatgtca 60  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  21958727 acctcttttatttcgatttatgactatttatatatattatgtca 21958770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 53
Target Start/End: Original strand, 34845148 - 34845179
Alignment:
Q  22 ttttattttgatttatgactatttatatatat 53  Q
    ||||||||||||||||||||||||||||||||    
T  34845148 ttttattttgatttatgactatttatatatat 34845179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 2826266 - 2826232
Alignment:
Q  17 acctcttttattttgatttatgactatttatatat 51  Q
    |||| ||||||||||||||||||||||||||||||    
T  2826266 acctattttattttgatttatgactatttatatat 2826232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 10467967 - 10468000
Alignment:
Q  18 cctcttttattttgatttatgactatttatatat 51  Q
    |||||||||||| |||||||||||||||||||||    
T  10467967 cctcttttatttcgatttatgactatttatatat 10468000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 28846822 - 28846854
Alignment:
Q  19 ctcttttattttgatttatgactatttatatat 51  Q
    ||||||||||| |||||||||||||||||||||    
T  28846822 ctcttttatttcgatttatgactatttatatat 28846854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 170414 - 170371
Alignment:
Q  17 acctcttttattttgatttatgactatttatatatattatgtca 60  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  170414 acctcttttatttcgatttatgactatttatatatattatgtca 170371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 41753167 - 41753210
Alignment:
Q  17 acctcttttattttgatttatgactatttatatatattatgtca 60  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||    
T  41753167 acctcttttatttcgatttctgactatttatatatattatgtca 41753210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 32885928 - 32885886
Alignment:
Q  18 cctcttttattttgatttatgactatttatatatattatgtca 60  Q
    ||||||||| |||||||||||| ||||||||||||||||||||    
T  32885928 cctcttttaatttgatttatgattatttatatatattatgtca 32885886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 35948938 - 35948896
Alignment:
Q  18 cctcttttattttgatttatgactatttatatatattatgtca 60  Q
    |||||||||||||||||||||||||||  ||||||||||||||    
T  35948938 cctcttttattttgatttatgactattattatatattatgtca 35948896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 30558964 - 30558931
Alignment:
Q  18 cctcttttattttgatttatgactatttatatat 51  Q
    ||||||||||||||||||||||||||||||||||    
T  30558964 cctcttttattttgatttatgactatttatatat 30558931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 30055038 - 30055070
Alignment:
Q  19 ctcttttattttgatttatgactatttatatat 51  Q
    |||||||||||||||||||||||||||||||||    
T  30055038 ctcttttattttgatttatgactatttatatat 30055070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 11843857 - 11843816
Alignment:
Q  17 acctcttttattttgatttatgactatttatatatattatgt 58  Q
    |||| ||||||||  |||||||||||||||||||||||||||    
T  11843857 accttttttatttcaatttatgactatttatatatattatgt 11843816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 25017602 - 25017635
Alignment:
Q  18 cctcttttattttgatttatgactatttatatat 51  Q
    |||||||||||| |||||||||||||||||||||    
T  25017602 cctcttttatttcgatttatgactatttatatat 25017635  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 32984236 - 32984187
Alignment:
Q  124 tattcaaccgaatccaacaatcatctagtttcttccacataacatcaact 173  Q
    ||||||||||||||||||  || ||| ||||||||||||||| |||||||    
T  32984236 tattcaaccgaatccaaccgtcctctcgtttcttccacataatatcaact 32984187  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 44586109 - 44586077
Alignment:
Q  28 tttgatttatgactatttatatatattatgtca 60  Q
    |||||| ||||||||||||||||||||||||||    
T  44586109 tttgatatatgactatttatatatattatgtca 44586077  T

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Target: scaffold0019 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 134813 - 134771
Alignment:
Q  18 cctcttttattttgatttatgactatttatatatattatgtca 60  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  134813 cctcttttattttgatatatgactatttatatatattatgtca 134771  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 1296727 - 1296766
Alignment:
Q  21 cttttattttgatttatgactatttatatatattatgtca 60  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  1296727 cttttattttaatttatgactatttatatatattatgtca 1296766  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 11971174 - 11971208
Alignment:
Q  17 acctcttttattttgatttatgactatttatatat 51  Q
    ||||||||||| |||||||||||||||||||||||    
T  11971174 acctcttttatcttgatttatgactatttatatat 11971208  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 24074628 - 24074670
Alignment:
Q  18 cctcttttattttgatttatgactatttatatatattatgtca 60  Q
    |||||||||||||||||||| ||||||  ||||||||||||||    
T  24074628 cctcttttattttgatttattactattattatatattatgtca 24074670  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 31028048 - 31028014
Alignment:
Q  17 acctcttttattttgatttatgactatttatatat 51  Q
    ||||||||||||| |||||||||||||||||||||    
T  31028048 acctcttttatttcgatttatgactatttatatat 31028014  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 51
Target Start/End: Original strand, 30621385 - 30621414
Alignment:
Q  22 ttttattttgatttatgactatttatatat 51  Q
    ||||||||||||||||||||||||||||||    
T  30621385 ttttattttgatttatgactatttatatat 30621414  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 32441933 - 32441900
Alignment:
Q  18 cctcttttattttgatttatgactatttatatat 51  Q
    |||||||||||| |||||||||||||||||||||    
T  32441933 cctcttttatttcgatttatgactatttatatat 32441900  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 42843925 - 42843968
Alignment:
Q  17 acctcttttattttgatttatgactatttatatatattatgtca 60  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||    
T  42843925 acctcttttatttcgatttatgactatttatatatattacgtca 42843968  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 6255383 - 6255424
Alignment:
Q  19 ctcttttattttgatttatgactatttatatatattatgtca 60  Q
    ||||||||| ||||||||| ||||||||||||||||||||||    
T  6255383 ctcttttatcttgatttattactatttatatatattatgtca 6255424  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 53
Target Start/End: Complemental strand, 50720090 - 50720059
Alignment:
Q  22 ttttattttgatttatgactatttatatatat 53  Q
    ||||||||||||||||||||||||||||||||    
T  50720090 ttttattttgatttatgactatttatatatat 50720059  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 55464620 - 55464577
Alignment:
Q  17 acctcttttattttgatttatgactatttatatatattatgtca 60  Q
    ||||||||||||| |||||| ||| |||||||||||||||||||    
T  55464620 acctcttttatttcgatttacgacaatttatatatattatgtca 55464577  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 30111034 - 30111068
Alignment:
Q  17 acctcttttattttgatttatgactatttatatat 51  Q
    |||| ||||||||||||||||||||||||||||||    
T  30111034 acctattttattttgatttatgactatttatatat 30111068  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 1147715 - 1147748
Alignment:
Q  18 cctcttttattttgatttatgactatttatatat 51  Q
    |||||||||||||||||||| |||||||||||||    
T  1147715 cctcttttattttgatttataactatttatatat 1147748  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 53692993 - 53692960
Alignment:
Q  18 cctcttttattttgatttatgactatttatatat 51  Q
    |||||||||||| |||||||||||||||||||||    
T  53692993 cctcttttatttcgatttatgactatttatatat 53692960  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 31002685 - 31002653
Alignment:
Q  19 ctcttttattttgatttatgactatttatatat 51  Q
    ||||| |||||||||||||||||||||||||||    
T  31002685 ctcttgtattttgatttatgactatttatatat 31002653  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 204067 - 204108
Alignment:
Q  19 ctcttttattttgatttatgactatttatatatattatgtca 60  Q
    ||||||||||||||||||||||||||  ||||||||||||||    
T  204067 ctcttttattttgatttatgactattattatatattatgtca 204108  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 14317073 - 14317105
Alignment:
Q  22 ttttattttgatttatgactatttatatatatt 54  Q
    |||||||||||||||||||||||||||||||||    
T  14317073 ttttattttgatttatgactatttatatatatt 14317105  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 1280797 - 1280830
Alignment:
Q  18 cctcttttattttgatttatgactatttatatat 51  Q
    |||||||||||| |||||||||||||||||||||    
T  1280797 cctcttttatttcgatttatgactatttatatat 1280830  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 51
Target Start/End: Original strand, 2985795 - 2985824
Alignment:
Q  22 ttttattttgatttatgactatttatatat 51  Q
    ||||||||||||||||||||||||||||||    
T  2985795 ttttattttgatttatgactatttatatat 2985824  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 3055699 - 3055731
Alignment:
Q  19 ctcttttattttgatttatgactatttatatat 51  Q
    ||||||||||| |||||||||||||||||||||    
T  3055699 ctcttttatttcgatttatgactatttatatat 3055731  T

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Target: scaffold0178 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 51
Target Start/End: Original strand, 17960 - 17989
Alignment:
Q  22 ttttattttgatttatgactatttatatat 51  Q
    ||||||||||||||||||||||||||||||    
T  17960 ttttattttgatttatgactatttatatat 17989  T

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