View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4295_high_22 (Length: 208)
Name: NF4295_high_22
Description: NF4295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4295_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 29273631 - 29273457
Alignment:
| Q |
15 |
cacagaacactatcacgacaaaaccgcaatcagacaccaattgacaaaatcaaaagaaataattcaaacctaaaccccacctccatggaattaccttcga |
114 |
Q |
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| T |
29273631 |
cacagaacactatcacgacaaaaccgcaatcagacaccaattgacaaaatcaaaagaaataattcaaacctaaaccccacctccatggaattaccttcga |
29273532 |
T |
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| Q |
115 |
atcagaaaatcagaataacacaatttatcagtgaaatgcggtgaacccaggaatggattcggaagatacacaaac |
189 |
Q |
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| T |
29273531 |
atcagaaaatcagaataacacaatttatcagtgaaatgcggtgaacccaggaatggattcggaagatacacaaac |
29273457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 9e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 15 - 189
Target Start/End: Original strand, 55860935 - 55861099
Alignment:
| Q |
15 |
cacagaacactatcacgacaaaaccgcaatcagacaccaattgacaaaatcaaaagaaataattcaaacctaaaccccacctccatggaattaccttcga |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
55860935 |
cacagaacactatcacgacaaaaccgcaatcagacaccaattgacaaaatcaaaagaaataattcaaacctaaaccccacctccatggaattaccgtcga |
55861034 |
T |
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| Q |
115 |
atcagaaaatcagaataacacaatttatcagtgaaatgcggtgaacccaggaatggattcggaagatacacaaac |
189 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
55861035 |
atcagaaaatcagaataacacaatttatca----------gtgaacccaggaatggattcgaaagatacacaaac |
55861099 |
T |
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