View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4295_high_3 (Length: 520)
Name: NF4295_high_3
Description: NF4295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4295_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 316
Target Start/End: Complemental strand, 30296967 - 30296649
Alignment:
| Q |
8 |
catcatcatcgctctcatgatgtatctgttgttgttgtttacatgcaaaatgcatgcgttttgttcaacaatttttatctattttccttgattcgtttcc |
107 |
Q |
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| T |
30296967 |
catcatcatcgctctcatgatgtatctgttgttgttgtttacatgcaaaatacatgcgttttgttcaacaatttttatctattttccttgattcgtttcc |
30296868 |
T |
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| Q |
108 |
tatgtcttttaatttattattgcaagtatgattaaattattatgtgtttgattaacgatttggttatactgtgattgttgtttaatgcaagtgccacatt |
207 |
Q |
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| T |
30296867 |
tatgtcttttaatttattattgtaagtatgattaaattattatgtgtttgattaacgatttggttatactgtgat---tgtttaatgcaagtgccacatt |
30296771 |
T |
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| Q |
208 |
ttgacacctttatgtggtatatgttaaataagt-------------nnnnnnncatctaagattgttgttataggatgaattaaatcggatagaatgtga |
294 |
Q |
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| T |
30296770 |
ttgacacctttatgtggtatatgttaaataattggcgcgataactgaaaaaaacatctaagattgttgttataggatgaattaaatcggatagaatgtga |
30296671 |
T |
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| Q |
295 |
gttctatgatttgttgtcttga |
316 |
Q |
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| T |
30296670 |
gttctatgatttgttctcttga |
30296649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 334 - 505
Target Start/End: Complemental strand, 30296657 - 30296486
Alignment:
| Q |
334 |
ttctcttgactttgggtacggatcattgttacataaccagaatctgatgcgaatattaagatcatgcacgcttttcatttaatttataatttgtgattca |
433 |
Q |
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| T |
30296657 |
ttctcttgactttgggtacggatcattgttacataaccagaatctgatgcgaatattaagatcatgcacgcttttcatttaatttataatttgtgattca |
30296558 |
T |
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| Q |
434 |
tttggatggttttggcacgccatcttatagagttagaacttttctttaatagacgtaaatgttggttgttta |
505 |
Q |
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| T |
30296557 |
tttggatggttttggcacgccatattatagagttagaacttttctttaatagacgcaaatgttggttgttta |
30296486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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