View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4295_high_4 (Length: 472)

Name: NF4295_high_4
Description: NF4295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4295_high_4
NF4295_high_4
[»] chr4 (13 HSPs)
chr4 (65-463)||(35748644-35749042)
chr4 (393-464)||(29963629-29963700)
chr4 (402-463)||(32871809-32871870)
chr4 (396-461)||(45652665-45652730)
chr4 (396-463)||(13140283-13140348)
chr4 (372-456)||(56215605-56215689)
chr4 (372-434)||(40693632-40693694)
chr4 (370-463)||(35206166-35206259)
chr4 (371-463)||(51957518-51957608)
chr4 (394-463)||(54222037-54222106)
chr4 (371-459)||(10762486-10762574)
chr4 (370-450)||(12593605-12593685)
chr4 (16-55)||(35749056-35749093)
[»] chr5 (5 HSPs)
chr5 (372-458)||(15004709-15004795)
chr5 (369-463)||(30838345-30838439)
chr5 (407-463)||(5740381-5740437)
chr5 (372-464)||(4800477-4800573)
chr5 (388-434)||(38097795-38097841)
[»] chr8 (6 HSPs)
chr8 (368-456)||(43066581-43066669)
chr8 (370-461)||(30170711-30170802)
chr8 (368-434)||(26629119-26629185)
chr8 (394-463)||(14127266-14127335)
chr8 (398-459)||(16585376-16585437)
chr8 (394-463)||(37379414-37379483)
[»] chr6 (4 HSPs)
chr6 (397-463)||(38621-38687)
chr6 (394-463)||(13093648-13093719)
chr6 (394-463)||(20029283-20029350)
chr6 (388-463)||(10840734-10840809)
[»] chr7 (7 HSPs)
chr7 (402-463)||(27306005-27306066)
chr7 (370-464)||(48395246-48395340)
chr7 (372-461)||(6892615-6892704)
chr7 (394-463)||(24957171-24957240)
chr7 (370-433)||(8352772-8352835)
chr7 (402-463)||(42663395-42663456)
chr7 (398-463)||(47925363-47925428)
[»] chr2 (8 HSPs)
chr2 (371-456)||(13453942-13454027)
chr2 (369-460)||(9979093-9979184)
chr2 (372-463)||(31629604-31629695)
chr2 (370-463)||(22966784-22966877)
chr2 (372-463)||(30413427-30413518)
chr2 (397-463)||(29472011-29472077)
chr2 (371-450)||(31227545-31227622)
chr2 (371-431)||(37767778-37767838)
[»] chr1 (5 HSPs)
chr1 (367-456)||(35883594-35883683)
chr1 (370-450)||(12021929-12022008)
chr1 (422-462)||(34453456-34453496)
chr1 (396-457)||(18982543-18982605)
chr1 (370-463)||(42577470-42577565)
[»] scaffold0178 (1 HSPs)
scaffold0178 (396-463)||(11533-11600)
[»] scaffold1625 (1 HSPs)
scaffold1625 (369-463)||(761-855)
[»] chr3 (7 HSPs)
chr3 (394-449)||(39284663-39284716)
chr3 (369-433)||(47187530-47187594)
chr3 (372-463)||(9326965-9327056)
chr3 (394-463)||(11323931-11323998)
chr3 (369-457)||(19623238-19623326)
chr3 (370-450)||(31143268-31143348)
chr3 (371-461)||(41448161-41448248)


Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 65 - 463
Target Start/End: Complemental strand, 35749042 - 35748644
Alignment:
Q  65 cagaaaatgtgaacttccatttaaggaagcaagtactgttgtggccatgacgttttcaactgatagcttctccttggaatagttcatgctcaaatgcaaa 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35749042 cagaaaatgtgaacttccatttaaggaagcaagtactgttgtggccatgacgttttcaactggtagcttctccttggaatagttcatgctcaaatgcaaa 35748943  T
Q  165 tttggctatgttgttggaattgttcaactgttcagtctttacatttcaaaatttcaaacttcaaatagaaagaaattttgagtcagcaagtcgtaacatg 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35748942 tttggctatgttgttggaattgttcaactgttcagtctttacatttcaaaatttcaaacttcaaatagaaagaaattttgagtcagcaagtcgtaacatg 35748843  T
Q  265 gtgctaagtaacgtgatgcgtaattaccttgttaacttactttcttttttgacnnnnnnncttgttaactatttacataaattacgggtactaaataaca 364  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  35748842 gtgctaagtaacgtgatgcgtgattaccttgttaacttactttcttttttgacaaaaaaacttgttaactatttacataaattacgggtactaaataaca 35748743  T
Q  365 ttcataagagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctcttcttct 463  Q
    ||||||||||||||||||||| ||||| |||||||| | |||||||| ||||||| | ||||||||||||  |||| ||||||||| ||||||||||||    
T  35748742 ttcataagagaaatgttatttgcacaactactttttgataatttttggaacaatcatatctctcatactcagatgtgtttttattctctctcttcttct 35748644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 393 - 464
Target Start/End: Original strand, 29963629 - 29963700
Alignment:
Q  393 tactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctcttcttctc 464  Q
    |||||||| |||| ||||||||||||| ||||||| ||||||  || | ||||||||| |||||||||||||    
T  29963629 tactttttgacaacttttgaaacaatcatctctcttatactcacatttgtttttattctctctcttcttctc 29963700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 463
Target Start/End: Complemental strand, 32871870 - 32871809
Alignment:
Q  402 acaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctcttcttct 463  Q
    |||| ||||||||||||| ||||||||||| ||  ||||| |||||||| ||||||||||||    
T  32871870 acaacttttgaaacaatcatctctctcatattcacatgtagttttattctctctcttcttct 32871809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 396 - 461
Target Start/End: Original strand, 45652665 - 45652730
Alignment:
Q  396 tttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctcttctt 461  Q
    ||||| |||| ||||||||||| ||||| ||||||||||  |||| ||||||||| ||||||||||    
T  45652665 tttttgacaacttttgaaacaaacctctatctcatactcacatgtgtttttattctctctcttctt 45652730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 463
Target Start/End: Complemental strand, 13140348 - 13140283
Alignment:
Q  396 tttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctcttcttct 463  Q
    ||||| |||| |||||||||||  |||||||||||||||  |||| ||||||||| ||||||||||||    
T  13140348 tttttgacaacttttgaaacaa--ctctctctcatactcacatgtgtttttattctctctcttcttct 13140283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 456
Target Start/End: Original strand, 56215605 - 56215689
Alignment:
Q  372 gagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctc 456  Q
    |||||||| |||||  ||||  ||||||| |||| ||||||| ||||| ||||||||||||||  |||| ||||||||| |||||    
T  56215605 gagaaatgatatttgtacaaccactttttgacaacttttgaaccaatcatctctctcatactcacatgtgtttttattctctctc 56215689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 434
Target Start/End: Complemental strand, 40693694 - 40693632
Alignment:
Q  372 gagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactc 434  Q
    |||||||| |||||  ||||||| ||||| ||||||||||| |||| | ||||||||||||||    
T  40693694 gagaaatgatatttatacaattaatttttgacaatttttgagacaaccttctctctcatactc 40693632  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 463
Target Start/End: Original strand, 35206166 - 35206259
Alignment:
Q  370 aagagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctcttcttct 463  Q
    |||||||||| | |||  ||||| ||||||| | || |||||||||||  |||||||| ||||||  |||| ||||||||| |||| |||||||    
T  35206166 aagagaaatgatgtttgtacaatcactttttgataacttttgaaacaactctctctcttatactcacatgtgtttttattctctctattcttct 35206259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 463
Target Start/End: Original strand, 51957518 - 51957608
Alignment:
Q  371 agagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctcttcttct 463  Q
    ||||||||| |||||  |||| ||||||||||||||| |||||| ||  ||||||||  |||||  |||||||||||||| | ||||| ||||    
T  51957518 agagaaatgatatttgtacaactactttttaacaattattgaaataa--ctctctcttttactcacatgtatttttattctccctctttttct 51957608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 463
Target Start/End: Complemental strand, 54222106 - 54222037
Alignment:
Q  394 actttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctcttcttct 463  Q
    |||||||||||| ||||| ||||||| | ||||||||||||  ||||  |||||||| | ||||||||||    
T  54222106 actttttaacaacttttggaacaatcatgtctctcatactcacatgtgcttttattctccctcttcttct 54222037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 459
Target Start/End: Complemental strand, 10762574 - 10762486
Alignment:
Q  371 agagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctcttc 459  Q
    ||||||||| |||||  |||| |||||||| | || |||||||||||| |||||| | ||||||  || | ||||||||| ||||||||    
T  10762574 agagaaatgatatttatacaactactttttgataacttttgaaacaattctctcttttatactcacatatgtttttattctctctcttc 10762486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 450
Target Start/End: Complemental strand, 12593685 - 12593605
Alignment:
Q  370 aagagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattc 450  Q
    |||||||||| |||||  | ||||| ||||| ||||||||||||| |||| | |||||||||||   |||| |||||||||    
T  12593685 aagagaaatgatatttatataattattttttgacaatttttgaaataatcatttctctcatacttacatgtgtttttattc 12593605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 35749093 - 35749056
Alignment:
Q  16 catttctcaacagagtgttgctgctagactttttggaagg 55  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  35749093 catttctcaacag--tgttgctgctagactttttggaagg 35749056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 372 - 458
Target Start/End: Complemental strand, 15004795 - 15004709
Alignment:
Q  372 gagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctctt 458  Q
    |||||||| |||||  ||||  ||||||| |||||||||||||||||| |||||||||||||| | ||| ||||||||| |||||||    
T  15004795 gagaaatgatatttggacaaccactttttgacaatttttgaaacaatcatctctctcatactcatttgtttttttattctctctctt 15004709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 369 - 463
Target Start/End: Complemental strand, 30838439 - 30838345
Alignment:
Q  369 taagagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctcttcttct 463  Q
    ||||||||||| |||||  |||  |||||||| |||| ||||||||||| | ||||||||||||||  |||| ||||||||| ||| ||||||||    
T  30838439 taagagaaatgatatttgtacatctactttttgacaacttttgaaacaaccatctctctcatactcacatgtgtttttattctctcccttcttct 30838345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 407 - 463
Target Start/End: Original strand, 5740381 - 5740437
Alignment:
Q  407 ttttgaaacaatcctctctctcatactcgtatgtatttttattccctctcttcttct 463  Q
    |||||||||||| |||||||||||| ||  ||||||||| |||| ||||||||||||    
T  5740381 ttttgaaacaattctctctctcatattcacatgtattttaattctctctcttcttct 5740437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 464
Target Start/End: Complemental strand, 4800573 - 4800477
Alignment:
Q  372 gagaaatgttatttccacaattactttttaacaatttttgaaacaa---tc-ctctctctcatactcgtatgtatttttattccctctcttcttctc 464  Q
    |||||||| |||||  |||| |||||||| |||| ||||| |||||   || ||||||||||||||| ||||| ||||||||| ||||||| |||||    
T  4800573 gagaaatgatatttatacaactactttttgacaacttttggaacaactctctctctctctcatactcatatgtgtttttattctctctcttgttctc 4800477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 434
Target Start/End: Original strand, 38097795 - 38097841
Alignment:
Q  388 acaattactttttaacaatttttgaaacaatcctctctctcatactc 434  Q
    ||||||| |||||||||| ||||||||||||  ||||||||||||||    
T  38097795 acaattattttttaacaacttttgaaacaattatctctctcatactc 38097841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 368 - 456
Target Start/End: Complemental strand, 43066669 - 43066581
Alignment:
Q  368 ataagagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctc 456  Q
    |||||||||||| |||||  ||||  |||||||||||| ||||||||||||| |||||||||||  | ||||| ||||||||| |||||    
T  43066669 ataagagaaatgatatttgtacaaccactttttaacaacttttgaaacaatcatctctctcatatccatatgtgtttttattctctctc 43066581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 370 - 461
Target Start/End: Complemental strand, 30170802 - 30170711
Alignment:
Q  370 aagagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctcttctt 461  Q
    |||||||||| |||||  ||||  ||||||| |||| ||||||||||| | ||||||||||||||  |||| ||||||||| ||||||||||    
T  30170802 aagagaaatgatatttgtacaaccactttttgacaacttttgaaacaaccatctctctcatactcacatgtgtttttattctctctcttctt 30170711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 434
Target Start/End: Complemental strand, 26629185 - 26629119
Alignment:
Q  368 ataagagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactc 434  Q
    |||||||||||| |||||  ||||  ||||||| |||| ||||||||||| ||||||||||||||||    
T  26629185 ataagagaaatgatatttgtacaaccactttttgacaacttttgaaacaaccctctctctcatactc 26629119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 394 - 463
Target Start/End: Original strand, 14127266 - 14127335
Alignment:
Q  394 actttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctcttcttct 463  Q
    ||||||| |||||||||| ||||| | ||||||||||||||  |||| |||| |||| ||||||||||||    
T  14127266 actttttgacaatttttggaacaaccatctctctcatactcacatgtgttttaattctctctcttcttct 14127335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 398 - 459
Target Start/End: Complemental strand, 16585437 - 16585376
Alignment:
Q  398 tttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctcttc 459  Q
    |||||||| ||||||||||||  ||||||||||||||  |||| ||||||||| ||||||||    
T  16585437 tttaacaacttttgaaacaattatctctctcatactcacatgtgtttttattctctctcttc 16585376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 463
Target Start/End: Complemental strand, 37379483 - 37379414
Alignment:
Q  394 actttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctcttcttct 463  Q
    ||||||| |||| ||||||||||| | ||||||||||||||  ||||  |||||||| | ||||||||||    
T  37379483 actttttgacaacttttgaaacaaccatctctctcatactcacatgtgcttttattctccctcttcttct 37379414  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 397 - 463
Target Start/End: Original strand, 38621 - 38687
Alignment:
Q  397 ttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctcttcttct 463  Q
    |||| |||| ||| ||||||| ||||||||||||||||  |||||||||||||| ||||||||||||    
T  38621 ttttgacaactttggaaacaaccctctctctcatactcacatgtatttttattctctctcttcttct 38687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 394 - 463
Target Start/End: Original strand, 13093648 - 13093719
Alignment:
Q  394 actttttaacaatttttgaaacaa-tc-ctctctctcatactcgtatgtatttttattccctctcttcttct 463  Q
    ||||||| |||| ||||||||||| || ||||||||||||||| ||||| ||||||||| ||||||||||||    
T  13093648 actttttgacaacttttgaaacaactctctctctctcatactcatatgtgtttttattctctctcttcttct 13093719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 463
Target Start/End: Original strand, 20029283 - 20029350
Alignment:
Q  394 actttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctcttcttct 463  Q
    |||||||||||| ||||||||||| | ||||||||||||||  |||| ||||||||  ||||||||||||    
T  20029283 actttttaacaacttttgaaacaaccttctctctcatactcacatgtgtttttatt--ctctcttcttct 20029350  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 463
Target Start/End: Original strand, 10840734 - 10840809
Alignment:
Q  388 acaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctcttcttct 463  Q
    ||||||| ||||| |||| ||||| ||||||||||||||||||||||   ||| | || |||| ||||||||||||    
T  10840734 acaattattttttgacaacttttggaacaatcctctctctcatactcacttgtgtattaattctctctcttcttct 10840809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 402 - 463
Target Start/End: Complemental strand, 27306066 - 27306005
Alignment:
Q  402 acaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctcttcttct 463  Q
    |||| ||||||||||||||||||||||||||||  |||| ||||||||| ||||||| ||||    
T  27306066 acaacttttgaaacaatcctctctctcatactcacatgtgtttttattctctctctttttct 27306005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 464
Target Start/End: Original strand, 48395246 - 48395340
Alignment:
Q  370 aagagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctcttcttctc 464  Q
    |||||||||| |||||  ||||  ||||||| |||| |||||||||||  |||||||| ||||||  || | ||||||||| |||||||||||||    
T  48395246 aagagaaatgatatttgtacaaccactttttgacaacttttgaaacaactctctctcttatactcacatatgtttttattctctctcttcttctc 48395340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 372 - 461
Target Start/End: Complemental strand, 6892704 - 6892615
Alignment:
Q  372 gagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctcttctt 461  Q
    |||||||| |||||  ||||  ||| ||| |||| || |||||||| ||||||||||||||||  |||| ||||||||| ||||||||||    
T  6892704 gagaaatgatatttgtacaaccactctttgacaacttatgaaacaaccctctctctcatactcacatgtgtttttattctctctcttctt 6892615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 394 - 463
Target Start/End: Complemental strand, 24957240 - 24957171
Alignment:
Q  394 actttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctcttcttct 463  Q
    ||||||| ||||||||||  |||| ||||||||||||||||  |||| ||||||||| ||||| ||||||    
T  24957240 actttttgacaatttttggcacaaccctctctctcatactcacatgtgtttttattctctctcgtcttct 24957171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 433
Target Start/End: Original strand, 8352772 - 8352835
Alignment:
Q  370 aagagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatact 433  Q
    |||||||||| |||||  ||||  ||||||| |||||||||||||||| | |||||||||||||    
T  8352772 aagagaaatgatatttatacaaccactttttgacaatttttgaaacaaccatctctctcatact 8352835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 463
Target Start/End: Complemental strand, 42663456 - 42663395
Alignment:
Q  402 acaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctcttcttct 463  Q
    |||| ||||||||||||||| | ||||||||||  |||| ||||||||| || |||||||||    
T  42663456 acaacttttgaaacaatcctatatctcatactcacatgtgtttttattctctatcttcttct 42663395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 463
Target Start/End: Original strand, 47925363 - 47925428
Alignment:
Q  398 tttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctcttcttct 463  Q
    |||||||| ||||| ||||| ||||||||||||||||  |||| |||| |||| || |||||||||    
T  47925363 tttaacaacttttggaacaaccctctctctcatactcacatgtgttttaattctctatcttcttct 47925428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 456
Target Start/End: Complemental strand, 13454027 - 13453942
Alignment:
Q  371 agagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctc 456  Q
    ||||||||| ||| |  ||||| ||||||| |||| |||||||||||| |||||||||||||||  |||| ||||||||| |||||    
T  13454027 agagaaatgatatctgtacaatcactttttgacaacttttgaaacaattctctctctcatactcacatgtgtttttattctctctc 13453942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 460
Target Start/End: Original strand, 9979093 - 9979184
Alignment:
Q  369 taagagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctcttct 460  Q
    ||||||||||| |||||  ||||  ||||||| ||||||||||  |||| | ||||||||||||||  |||| ||||||||| |||||||||    
T  9979093 taagagaaatgatatttgtacaaccactttttcacaatttttgtgacaaccatctctctcatactcacatgtgtttttattctctctcttct 9979184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 463
Target Start/End: Original strand, 31629604 - 31629695
Alignment:
Q  372 gagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctcttcttct 463  Q
    |||||||| |||||  |||| |||||||| |||| ||||| ||||| | ||||||| ||||||  |||| ||||||||| ||||||||||||    
T  31629604 gagaaatgatatttgtacaactactttttgacaacttttggaacaaccatctctctaatactcacatgtgtttttattctctctcttcttct 31629695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 370 - 463
Target Start/End: Original strand, 22966784 - 22966877
Alignment:
Q  370 aagagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctcttcttct 463  Q
    |||||||||| |||||  ||||  ||||||| | || ||||||||||| ||||||||||||| ||  |||| ||||||||| ||||||| ||||    
T  22966784 aagagaaatgatatttgtacaaccactttttgataacttttgaaacaaccctctctctcatattcacatgtgtttttattctctctctttttct 22966877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 463
Target Start/End: Original strand, 30413427 - 30413518
Alignment:
Q  372 gagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctcttcttct 463  Q
    |||||||| |||||| | ||| | ||||  ||||||||| ||| | ||||||| |||||||||| |||| ||||||||  ||||||||||||    
T  30413427 gagaaatgatatttctaaaatcatttttcgacaatttttaaaaaattcctctcactcatactcgcatgtgtttttattttctctcttcttct 30413518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 463
Target Start/End: Complemental strand, 29472077 - 29472011
Alignment:
Q  397 ttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctcttcttct 463  Q
    |||| |||| ||||||||||| || |||||||||||||  |||| ||||||||| || |||||||||    
T  29472077 ttttgacaacttttgaaacaaccccctctctcatactcacatgtgtttttattctctatcttcttct 29472011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 450
Target Start/End: Complemental strand, 31227622 - 31227545
Alignment:
Q  371 agagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattc 450  Q
    ||||||||| ||| |  ||||| ||||||| |||| |||||||||||  |||||||||||||||  |||| |||||||||    
T  31227622 agagaaatgatatgtgtacaatcactttttgacaacttttgaaacaa--ctctctctcatactcacatgtttttttattc 31227545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 431
Target Start/End: Complemental strand, 37767838 - 37767778
Alignment:
Q  371 agagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcata 431  Q
    ||||||||| |||||  ||||  ||||||| |||| ||||||||||||| |||||||||||    
T  37767838 agagaaatgatatttatacaaccactttttgacaacttttgaaacaatcatctctctcata 37767778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 456
Target Start/End: Complemental strand, 35883683 - 35883594
Alignment:
Q  367 cataagagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctc 456  Q
    ||||||||||||| |||||  ||||||| ||||| |||| ||||||||||| | | ||||||||||||  |||| ||||||||| |||||    
T  35883683 cataagagaaatgatatttgtacaattattttttgacaacttttgaaacaaccatatctctcatactcacatgtgtttttattctctctc 35883594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 450
Target Start/End: Complemental strand, 12022008 - 12021929
Alignment:
Q  370 aagagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattc 450  Q
    |||||||||| || ||  ||||||||||||| |||| ||||||||||| ||  ||||||||||||  ||||||||||||||    
T  12022008 aagagaaatgatacttttacaattactttttgacaacttttgaaacaa-cccatctctcatactcaaatgtatttttattc 12021929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 462
Target Start/End: Complemental strand, 34453496 - 34453456
Alignment:
Q  422 ctctctcatactcgtatgtatttttattccctctcttcttc 462  Q
    ||||||||||||| ||||||||||||||| |||||||||||    
T  34453496 ctctctcatactcatatgtatttttattctctctcttcttc 34453456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 396 - 457
Target Start/End: Original strand, 18982543 - 18982605
Alignment:
Q  396 tttttaacaatttttgaaacaatcctctctctcatactcgta-tgtatttttattccctctct 457  Q
    |||||||||| |||||  |||| |||||||||||||||| || ||||||||||||| ||||||    
T  18982543 tttttaacaacttttgtgacaaccctctctctcatactcttattgtatttttattctctctct 18982605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 463
Target Start/End: Original strand, 42577470 - 42577565
Alignment:
Q  370 aagagaaatgttatttccacaattactttttaacaatttttgaaacaatc--ctctctctcatactcgtatgtatttttattccctctcttcttct 463  Q
    |||||||||| |||||  ||||| || ||||||||| |||||||| |||   |||||||||||| |   |||| ||||||||| ||||||||||||    
T  42577470 aagagaaatgatatttgtacaatcacattttaacaacttttgaaataattttctctctctcatatttacatgtgtttttattctctctcttcttct 42577565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 396 - 463
Target Start/End: Complemental strand, 11600 - 11533
Alignment:
Q  396 tttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctcttcttct 463  Q
    ||||| |||| |||||||||||| |||||||||||||||  |||| ||||||||| |||||| |||||    
T  11600 tttttgacaacttttgaaacaattctctctctcatactcaaatgtgtttttattctctctctccttct 11533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1625 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1625
Description:

Target: scaffold1625; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 463
Target Start/End: Complemental strand, 855 - 761
Alignment:
Q  369 taagagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctcttcttct 463  Q
    |||||| |||| |||||  ||||| | ||||| |||| ||||||||||| | ||||||||||||||  |||| |||| |||| ||||||||||||    
T  855 taagaggaatgatatttgtacaatcattttttgacaacttttgaaacaaccatctctctcatactcacatgtgttttaattctctctcttcttct 761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 449
Target Start/End: Complemental strand, 39284716 - 39284663
Alignment:
Q  394 actttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttatt 449  Q
    ||||||| |||| |||||||||||  ||||||||||||||| ||||||||||||||    
T  39284716 actttttgacaacttttgaaacaa--ctctctctcatactcatatgtatttttatt 39284663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 433
Target Start/End: Complemental strand, 47187594 - 47187530
Alignment:
Q  369 taagagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatact 433  Q
    |||||| |||| |||||  ||||||||||||| |||| ||||||||||| ||| |||||||||||    
T  47187594 taagaggaatgatatttgtacaattactttttcacaacttttgaaacaaccctttctctcatact 47187530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 463
Target Start/End: Complemental strand, 9327056 - 9326965
Alignment:
Q  372 gagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctcttcttct 463  Q
    |||||||| |||||  ||||| | ||||  |||| ||||||||||| | ||| ||||||||||  |||| ||||||||| ||||||||||||    
T  9327056 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccatctatctcatactcacatgtctttttattctctctcttcttct 9326965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 463
Target Start/End: Original strand, 11323931 - 11323998
Alignment:
Q  394 actttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctcttcttct 463  Q
    |||||||||||| |||||| ||||  ||||||||||||||   |||| ||||||||| ||||||||||||    
T  11323931 actttttaacaacttttgatacaa--ctctctctcatacttccatgtgtttttattctctctcttcttct 11323998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 457
Target Start/End: Complemental strand, 19623326 - 19623238
Alignment:
Q  369 taagagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctct 457  Q
    ||||||||||| |||||  ||||| ||||||| | || |||| |||||||  |||||||||||||   |||| ||||||||| ||||||    
T  19623326 taagagaaatgatatttgtacaatcactttttgataacttttaaaacaataatctctctcatacttacatgtctttttattctctctct 19623238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 450
Target Start/End: Original strand, 31143268 - 31143348
Alignment:
Q  370 aagagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattc 450  Q
    ||||||| || |||||  ||||| | ||||| |||| ||||||||||||| ||||||| ||||||  |||| |||||||||    
T  31143268 aagagaagtgatatttgtacaatcattttttgacaacttttgaaacaatcatctctctaatactcacatgtgtttttattc 31143348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 461
Target Start/End: Complemental strand, 41448248 - 41448161
Alignment:
Q  371 agagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctcttctt 461  Q
    ||||||||| |||||  ||||  | |||| ||||| ||||||||||| ||||||||||||||||  |||   |||||||| ||||||||||    
T  41448248 agagaaatgatatttgtacaaccatttttaaacaacttttgaaacaaccctctctctcatactcacatg---ttttattctctctcttctt 41448161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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