View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4295_high_6 (Length: 388)
Name: NF4295_high_6
Description: NF4295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4295_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 30483433 - 30483068
Alignment:
| Q |
1 |
ccaagtgagaaagaggatgtttggtagagcttggccttttagggcaccagtcagagatggccttgttaccttatggcctcaattaatggctgcccaaagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30483433 |
ccaagtgagaaagaggatgtttggtagagcttggccttttagggcaccagtcagagatggccttgttaccttatggcctcaattaatggctgcccaaagg |
30483334 |
T |
|
| Q |
101 |
agacatgtcccttgtgttgtaagtttttatgatataaatttaatttgggtcgtgttaacctggcactgattaaggaaaccaataacaaatttcgcaaaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30483333 |
agacatgtcccttgtgttgtaagtttttatgatatgaatttaatttgggtcgtgttaacctggcactgattaaggaaaccaataacaaatttcgcaaaac |
30483234 |
T |
|
| Q |
201 |
gcagaatgatgaagtagcaaccacgtggctaaacaacgatgcagtcaggaaagccattcatgttgataaggtatgcagggaaaaaatttaattacactaa |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30483233 |
gcagaatgatgaagtagcaaccacatggctaaacaacgatgcagtcaggaaagccattcatgttgataaggtatgcagggaaaaaatttaattacactaa |
30483134 |
T |
|
| Q |
301 |
gggaaaaaattaatatattgaggactaattaatttatgatttcgcacaggcaagtggtgcatggcaattatg |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30483133 |
gggaaaaaattaatatattgaggactaattaatttatgat------caggcaagtggtgcatggcaattatg |
30483068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University