View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4295_low_1 (Length: 677)

Name: NF4295_low_1
Description: NF4295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4295_low_1
NF4295_low_1
[»] scaffold0457 (1 HSPs)
scaffold0457 (45-659)||(29-643)
[»] scaffold0045 (1 HSPs)
scaffold0045 (45-659)||(45496-46098)
[»] chr6 (18 HSPs)
chr6 (261-430)||(21631705-21631876)
chr6 (261-430)||(13181827-13181997)
chr6 (231-430)||(5988442-5988642)
chr6 (273-429)||(9517928-9518085)
chr6 (225-430)||(26604842-26605049)
chr6 (261-430)||(25977471-25977640)
chr6 (261-430)||(34914210-34914379)
chr6 (225-295)||(9932239-9932309)
chr6 (328-430)||(15642938-15643043)
chr6 (225-295)||(26514862-26514932)
chr6 (261-430)||(14271194-14271363)
chr6 (231-295)||(21595968-21596032)
chr6 (225-295)||(3539705-3539775)
chr6 (225-295)||(16698567-16698637)
chr6 (225-295)||(25055991-25056061)
chr6 (225-430)||(32806197-32806403)
chr6 (231-295)||(5670717-5670781)
chr6 (225-295)||(24160688-24160758)
[»] chr1 (26 HSPs)
chr1 (261-422)||(8995731-8995894)
chr1 (313-430)||(3365747-3365866)
chr1 (343-430)||(9269157-9269246)
chr1 (313-430)||(36084280-36084398)
chr1 (225-430)||(11738232-11738438)
chr1 (317-430)||(13830790-13830905)
chr1 (225-295)||(12167650-12167720)
chr1 (225-295)||(20225796-20225866)
chr1 (317-430)||(39456793-39456908)
chr1 (231-290)||(40999544-40999603)
chr1 (225-295)||(431775-431845)
chr1 (225-295)||(13217482-13217552)
chr1 (225-295)||(16131159-16131229)
chr1 (225-295)||(16832217-16832287)
chr1 (225-295)||(33491632-33491702)
chr1 (225-295)||(39000615-39000685)
chr1 (225-290)||(38121366-38121431)
chr1 (333-430)||(9667238-9667336)
chr1 (333-430)||(33491740-33491838)
chr1 (366-430)||(15161948-15162014)
chr1 (343-430)||(20225914-20226002)
chr1 (225-295)||(49249721-49249791)
chr1 (333-430)||(431883-431981)
chr1 (333-430)||(12167758-12167856)
chr1 (333-430)||(16832325-16832423)
chr1 (333-430)||(38121474-38121572)
[»] chr2 (20 HSPs)
chr2 (260-430)||(41978116-41978288)
chr2 (225-430)||(28457311-28457517)
chr2 (226-430)||(36556997-36557202)
chr2 (343-430)||(9786656-9786744)
chr2 (231-430)||(32523450-32523652)
chr2 (225-430)||(43992036-43992241)
chr2 (366-430)||(21160487-21160553)
chr2 (225-295)||(27258042-27258112)
chr2 (225-295)||(29224372-29224442)
chr2 (225-295)||(29337671-29337741)
chr2 (231-295)||(8679235-8679299)
chr2 (366-430)||(24662702-24662768)
chr2 (225-430)||(36667322-36667528)
chr2 (333-430)||(13229884-13229982)
chr2 (225-273)||(23924466-23924514)
chr2 (226-286)||(28006751-28006811)
chr2 (231-295)||(42700414-42700478)
chr2 (225-295)||(14701302-14701372)
chr2 (225-295)||(36039696-36039766)
chr2 (333-430)||(8679337-8679435)
[»] chr5 (18 HSPs)
chr5 (261-430)||(37251375-37251545)
chr5 (225-295)||(16904043-16904113)
chr5 (225-295)||(27166532-27166602)
chr5 (225-295)||(9405082-9405152)
chr5 (225-295)||(11767412-11767482)
chr5 (225-295)||(24836380-24836450)
chr5 (225-295)||(30606510-30606580)
chr5 (225-295)||(33435260-33435330)
chr5 (225-295)||(34456953-34457023)
chr5 (232-288)||(6270555-6270611)
chr5 (333-430)||(7315726-7315824)
chr5 (225-295)||(7315862-7315932)
chr5 (225-295)||(11722710-11722780)
chr5 (333-430)||(9404946-9405044)
chr5 (333-430)||(11767276-11767374)
chr5 (333-430)||(24836244-24836342)
chr5 (333-430)||(30606618-30606716)
chr5 (362-403)||(35383225-35383268)
[»] scaffold0859 (1 HSPs)
scaffold0859 (261-430)||(4815-4987)
[»] chr8 (28 HSPs)
chr8 (313-430)||(12538685-12538804)
chr8 (261-430)||(22222144-22222315)
chr8 (261-430)||(22228486-22228657)
chr8 (261-430)||(22226977-22227148)
chr8 (261-430)||(22233319-22233490)
chr8 (273-430)||(22242724-22242883)
chr8 (333-420)||(13848869-13848958)
chr8 (261-430)||(17993388-17993557)
chr8 (317-430)||(1607791-1607906)
chr8 (225-392)||(16959112-16959279)
chr8 (342-430)||(4861502-4861591)
chr8 (225-295)||(11308421-11308491)
chr8 (225-295)||(22181234-22181304)
chr8 (225-295)||(28370751-28370821)
chr8 (225-295)||(9067601-9067671)
chr8 (225-295)||(28925577-28925647)
chr8 (225-295)||(41576765-41576835)
chr8 (333-430)||(11308529-11308627)
chr8 (333-430)||(27348548-27348646)
chr8 (333-430)||(34006315-34006413)
chr8 (366-430)||(13510485-13510551)
chr8 (366-430)||(13600015-13600081)
chr8 (225-295)||(3299459-3299529)
chr8 (225-295)||(8742717-8742787)
chr8 (333-430)||(3299323-3299421)
chr8 (333-430)||(9067709-9067807)
chr8 (333-430)||(28370615-28370713)
chr8 (333-430)||(28925685-28925783)
[»] chr3 (33 HSPs)
chr3 (314-430)||(2357682-2357800)
chr3 (225-430)||(33248511-33248717)
chr3 (225-430)||(7652656-7652862)
chr3 (261-430)||(1231962-1232131)
chr3 (342-430)||(23194441-23194530)
chr3 (225-295)||(11260221-11260291)
chr3 (225-295)||(36468870-36468940)
chr3 (333-430)||(20962798-20962896)
chr3 (231-295)||(22098638-22098702)
chr3 (333-430)||(24899471-24899570)
chr3 (333-430)||(24905937-24906036)
chr3 (225-295)||(4742436-4742506)
chr3 (225-295)||(10385504-10385574)
chr3 (225-295)||(23382962-23383032)
chr3 (343-430)||(27104513-27104602)
chr3 (225-295)||(27849985-27850055)
chr3 (225-295)||(52307519-52307589)
chr3 (333-430)||(8626145-8626243)
chr3 (231-295)||(8626281-8626345)
chr3 (333-430)||(10385612-10385710)
chr3 (333-430)||(20837615-20837713)
chr3 (333-430)||(23394091-23394189)
chr3 (333-430)||(37023212-37023310)
chr3 (333-430)||(45528169-45528267)
chr3 (225-273)||(48167625-48167673)
chr3 (225-295)||(20962692-20962760)
chr3 (225-295)||(9990053-9990123)
chr3 (343-430)||(27850103-27850191)
chr3 (226-295)||(20837751-20837820)
chr3 (333-430)||(9989917-9990015)
chr3 (333-430)||(22098188-22098286)
chr3 (333-430)||(22098502-22098600)
chr3 (333-430)||(52307627-52307725)
[»] scaffold0505 (1 HSPs)
scaffold0505 (261-430)||(454-624)
[»] scaffold0160 (1 HSPs)
scaffold0160 (313-430)||(34844-34963)
[»] chr4 (24 HSPs)
chr4 (317-430)||(53895900-53896015)
chr4 (225-430)||(30217820-30218027)
chr4 (317-430)||(6640484-6640599)
chr4 (345-422)||(20949276-20949355)
chr4 (343-430)||(33110251-33110342)
chr4 (225-422)||(26373065-26373263)
chr4 (225-392)||(55327333-55327499)
chr4 (225-295)||(324096-324166)
chr4 (225-295)||(4838570-4838640)
chr4 (225-295)||(5272997-5273067)
chr4 (225-295)||(22048339-22048409)
chr4 (225-290)||(1188627-1188692)
chr4 (225-430)||(40994981-40995187)
chr4 (333-430)||(1188486-1188584)
chr4 (225-273)||(35416130-35416178)
chr4 (366-430)||(4838710-4838776)
chr4 (366-430)||(19247402-19247468)
chr4 (225-295)||(21668338-21668408)
chr4 (225-295)||(21677102-21677172)
chr4 (225-295)||(42532320-42532390)
chr4 (225-295)||(44428825-44428895)
chr4 (343-430)||(52619024-52619112)
chr4 (225-295)||(52619160-52619230)
chr4 (333-430)||(323960-324058)
[»] chr7 (33 HSPs)
chr7 (339-430)||(29032341-29032434)
chr7 (261-403)||(1275137-1275281)
chr7 (343-430)||(22909639-22909727)
chr7 (225-430)||(2796997-2797203)
chr7 (226-430)||(12184381-12184586)
chr7 (225-430)||(3544312-3544518)
chr7 (225-300)||(8107322-8107397)
chr7 (343-430)||(4704930-4705018)
chr7 (225-295)||(31879256-31879326)
chr7 (225-430)||(31882632-31882838)
chr7 (231-295)||(22321241-22321305)
chr7 (366-430)||(2478182-2478248)
chr7 (231-430)||(12089899-12090099)
chr7 (231-290)||(31663952-31664011)
chr7 (225-295)||(2632054-2632124)
chr7 (225-295)||(10345740-10345810)
chr7 (225-295)||(12191499-12191569)
chr7 (225-295)||(23795751-23795821)
chr7 (225-295)||(31157710-31157780)
chr7 (225-295)||(45500145-45500215)
chr7 (226-295)||(1954584-1954653)
chr7 (333-430)||(22321343-22321441)
chr7 (225-288)||(24483410-24483473)
chr7 (225-295)||(6173173-6173243)
chr7 (343-430)||(24483267-24483355)
chr7 (226-295)||(22825266-22825335)
chr7 (333-430)||(1954448-1954546)
chr7 (333-430)||(2631918-2632016)
chr7 (239-295)||(4704826-4704882)
chr7 (333-430)||(8107430-8107528)
chr7 (333-430)||(10345847-10345945)
chr7 (333-430)||(23795616-23795714)
chr7 (333-430)||(31157818-31157916)
[»] scaffold0059 (2 HSPs)
scaffold0059 (225-422)||(15902-16105)
scaffold0059 (250-299)||(14682-14731)
[»] scaffold0019 (2 HSPs)
scaffold0019 (231-430)||(116008-116208)
scaffold0019 (225-295)||(168842-168912)
[»] scaffold0458 (1 HSPs)
scaffold0458 (317-411)||(6809-6905)
[»] scaffold0515 (1 HSPs)
scaffold0515 (261-430)||(7278-7447)
[»] scaffold0306 (1 HSPs)
scaffold0306 (261-430)||(7288-7457)
[»] scaffold0060 (1 HSPs)
scaffold0060 (317-429)||(6038-6152)
[»] scaffold0336 (1 HSPs)
scaffold0336 (225-430)||(9264-9470)
[»] scaffold0152 (1 HSPs)
scaffold0152 (261-430)||(24899-25068)
[»] scaffold0014 (1 HSPs)
scaffold0014 (231-295)||(75892-75956)
[»] scaffold0124 (2 HSPs)
scaffold0124 (225-295)||(12852-12922)
scaffold0124 (333-430)||(12716-12814)
[»] scaffold0015 (1 HSPs)
scaffold0015 (225-295)||(175259-175329)
[»] scaffold0002 (1 HSPs)
scaffold0002 (225-295)||(350040-350110)
[»] scaffold0091 (1 HSPs)
scaffold0091 (317-430)||(14706-14820)
[»] scaffold0076 (1 HSPs)
scaffold0076 (333-430)||(25192-25290)
[»] scaffold0298 (4 HSPs)
scaffold0298 (225-288)||(11638-11701)
scaffold0298 (225-288)||(15408-15471)
scaffold0298 (333-430)||(11746-11844)
scaffold0298 (333-430)||(15516-15614)
[»] scaffold0444 (2 HSPs)
scaffold0444 (225-295)||(11922-11992)
scaffold0444 (333-430)||(12030-12128)
[»] scaffold0159 (1 HSPs)
scaffold0159 (225-295)||(28333-28403)


Alignment Details
Target: scaffold0457 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: scaffold0457
Description:

Target: scaffold0457; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 45 - 659
Target Start/End: Complemental strand, 643 - 29
Alignment:
Q  45 ggaaatgaaaacacaaaatgaaaaaagtaggggcaaatgtctttttatatgtaatttaaatttaaatttttctatttacaaattgctcgcgaattgtcaa 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  643 ggaaatgaaaacacaaaatgaaaaaagtaggggcaaatgtcttttaatatgtaatttaaatttaaatttttctatttacaaattgctcgcgaattgtcaa 544  T
Q  145 ttttacccctacgtcttttaacctattttatttacacataagtatattagaattgtgtgagtttaactattttacccttacgtatctcataaacattttc 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||    
T  543 ttttacccctacgtcttttaacctattttatttacacataagtatattagaattgtgtgggtttaactattttacccctacgtatctcataagcattttc 444  T
Q  245 acaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaataaataaagactagatagggtcat 344  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  443 acaatatttatcacattaagtgtttgggtttaaaatgtttgtttgtataaatctaaatgatctatgtcacataaaataaataaagaccagatagggtcat 344  T
Q  345 ttcgtttggggtctgagacactcaaccaagcgtaacaactgcaatctcgatcaaataacatattctaactttttaaacaatattatgtaccactaattgt 444  Q
    ||  |||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  343 tttatttaaggtcagagacactcaaccaagcgtaacaactgcaatctcgatcaaataacatattctagctttttaaacaatattatgtaccactaattgt 244  T
Q  445 tctattctaattatcaattctaaaatctaaaggtaccaatatataatctaatcgtaacatattaagattaattagatagtttatatattatagcatgaca 544  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  243 tctattctaattatcaattctaaaatctaaaggtaccaatatataatctaatcgtaacatattaagattaattagatagtttatatattatagcatgaca 144  T
Q  545 atggaagttatatcacacctaatattttaggcataataaggttactcttaaattgatgtgtttatgattttacattagttgctggttatatcaaaaatag 644  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  143 atggaagttatatcacacctaatattttaggcataataaggttactcttaaattgatgtgtttatgattttacattagttgctggttatatcaaaaatag 44  T
Q  645 ttaatatgttacaat 659  Q
    |||||||||||||||    
T  43 ttaatatgttacaat 29  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 45 - 659
Target Start/End: Original strand, 45496 - 46098
Alignment:
Q  45 ggaaatgaaaacacaaaatgaaaaaagtaggggcaaatgtctttttatatgtaattt-aaatttaaatttttctatttacaaattgctcgcgaattgtca 143  Q
    |||||||||||||||||||  ||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  45496 ggaaatgaaaacacaaaatataaaaagtagcggcaaatgtctttttatatgtaatttcaaatttaaattttgctatttacaaattgctcgcgaattgtca 45595  T
Q  144 attttacccctacgtcttttaacctattttatttacacataagtatattagaattgtgtgagtttaactattttacccttacgtatctcataaacatttt 243  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |                ||| | ||||||||| ||||||    
T  45596 attttacccctacgtcttttaagctattttatttacacataagtatattagaatggtgtgtggga-------------ttaggcatctcataagcatttt 45682  T
Q  244 cacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaataaataaagactagatagggtca 343  Q
    | |||||||||| ||||||||||||||| || | |||||||||||||||||| |||||| |||||| ||||||||| ||||||||||| |||| ||||||    
T  45683 cgcaatatttatcacattaagtgtttggcttaa-aatgtttgtttgtataaacctaaattatctatatcacataaattaaataaagaccagatcgggtca 45781  T
Q  344 tttcgtttggggtctgagacactcaaccaagcgtaacaactgcaatctcgatcaaataacatattctaactttttaaacaatattatgtaccactaattg 443  Q
    ||||| ||| |||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||  ||||||||| ||||||||||||||||||||    
T  45782 tttcgcttgaggtcagagacactcaaccaagcgtaacaaatgcaatctcgatcaaataacagattctagttttttaaacgatattatgtaccactaattg 45881  T
Q  444 ttctattctaattatcaattctaaaat-ctaaaggtaccaatatataatctaatcgtaacatattaagattaattagatagtttatatattatagcatga 542  Q
    ||||||||||||||||||||||||||| ||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45882 ttctattctaattatcaattctaaaatactaaaagtaacaatatataaactaatcgtaacatattaagattaattagatagtttatatattatagcatga 45981  T
Q  543 caatggaagttatatcacacctaatattttaggcataataaggttactcttaaattgatgtgtttatgattttacattagttgctggttatatcaaaaat 642  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45982 caatggaagttatatcacacctaatattttaggcataataaggttactcttaaattgatgtgtttatgattttacattagttgctggttatatcaaaaat 46081  T
Q  643 agttaatatgttacaat 659  Q
    |||||||||||||||||    
T  46082 agttaatatgttacaat 46098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 4e-40; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 261 - 430
Target Start/End: Complemental strand, 21631876 - 21631705
Alignment:
Q  261 taagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaataaataaagactagatagggtcatttcgtttggggtctga 360  Q
    ||||||| ||| |||| ||||||||||||| |||| ||| || | |||| | |||||||||||||| |||  ||||||||||||| || |||||||| ||    
T  21631876 taagtgtatggatttaaaatgtttgtttgtgtaaacctatataaactatttgacataaaataaatagagaagagatagggtcattccgcttggggtcaga 21631777  T
Q  361 gacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||||||||||||||||||||||  |||||||||||||||  ||||||||||||||||| |||||||    
T  21631776 gacactcaaccaagcgtaacaactgcaacctctcgatcaaataacggattctaactttttaaacgatattat 21631705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 261 - 430
Target Start/End: Original strand, 13181827 - 13181997
Alignment:
Q  261 taagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaataaataaagactagatagggtcatttcgtttggggtctga 360  Q
    ||||||| ||| |||| ||||| ||||||| |||| ||| || | |||| | ||| ||||| |||| |||  ||||| |||||||||| ||||| || ||    
T  13181827 taagtgtatggatttaaaatgtgtgtttgtgtaaa-ctatattaactatttgacagaaaattaatagagaagagataaggtcatttcgcttgggatcaga 13181925  T
Q  361 gacactcaaccaagcgtaacaactgcaatct--cgatcaaataacatattctaactttttaaacaatattat 430  Q
    |||||||||||||||||||||||||||||||  ||||||||||||  |||||| ||||||||||||||||||    
T  13181926 gacactcaaccaagcgtaacaactgcaatctcacgatcaaataacggattctagctttttaaacaatattat 13181997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 231 - 430
Target Start/End: Original strand, 5988442 - 5988642
Alignment:
Q  231 tcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaa-taaataaag 329  Q
    |||||| |||||||||||||||||| ||||||| ||||||||| || ||||||||||||| |||| || | |  |||||   |||||||| ||||   ||    
T  5988442 tcataagcattttcacaatatttatcacattaactgtttgggtataaaatgtttgtttgtgtaaaact-atttttctatccgacataaaagtaaaacgag 5988540  T
Q  330 actagatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatat 427  Q
    |  ||||||||  |||||  |||||||| |||||| ||||||||||| |||||||||||  |||||||||||||||  |||||| |||||||||| ||||    
T  5988541 aagagatagggctatttcacttggggtcagagaca-tcaaccaagcgcaacaactgcaatctctcgatcaaataacggattctagctttttaaacgatat 5988639  T
Q  428 tat 430  Q
    |||    
T  5988640 tat 5988642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 273 - 429
Target Start/End: Original strand, 9517928 - 9518085
Alignment:
Q  273 tttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaataaataaagactagatagggtcatttcgtttggggtctgagacactcaacca 372  Q
    |||| ||||| ||||||| |||| ||| || | |||| | |||||||||||||| |||  |||||||| ||||||| ||||| || || |||||||||||    
T  9517928 tttaaaatgtgtgtttgtgtaaacctatataaactatttgacataaaataaatagagaagagatagggccatttcgcttggg-tcagacacactcaacca 9518026  T
Q  373 agcgtaacaactgcaatct--cgatcaaataacatattctaactttttaaacaatatta 429  Q
    || ||||||||||||||||  | ||||||||||| |||||| |||||||||| ||||||    
T  9518027 agtgtaacaactgcaatctcacaatcaaataacagattctagctttttaaacgatatta 9518085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 225 - 430
Target Start/End: Complemental strand, 26605049 - 26604842
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaa-taa 323  Q
    ||||||| |||| |||||| || |||||||| |  |||||||||||||| || || |||||||||| |||| |||  | | |||| | |||||||| |||    
T  26605049 cgtatctgataagcattttaacgatatttatcatcttaagtgtttgggtataaaa-gtttgtttgtttaaaactattttaactatttgacataaaaataa 26604951  T
Q  324 ataaagactagatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaatct--cgatcaaataacatattctaactttttaaa 421  Q
    ||  |||| ||| |||| ||||||| |||||||  |||| | |||||||||||||||| |||||||||  ||| ||||||||  |||||| |||||||||    
T  26604950 atggagacgagagagggccatttcgcttggggttagagataatcaaccaagcgtaacagctgcaatctcacgagcaaataacggattctagctttttaaa 26604851  T
Q  422 caatattat 430  Q
    |||||||||    
T  26604850 caatattat 26604842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 261 - 430
Target Start/End: Complemental strand, 25977640 - 25977471
Alignment:
Q  261 taagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaataaataaagactagatagggtcatttcgtttggggtctga 360  Q
    ||||||| ||| |||| ||||| ||||||| |||| ||| || | |||| | |||||||||||||| |||  ||||||||  |||||  |||||||| |     
T  25977640 taagtgtatggatttaaaatgtgtgtttgtgtaaa-ctatataaactatttgacataaaataaatagagaagagatagggctatttcacttggggtcag- 25977543  T
Q  361 gacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    |||| |||||||||||||||| ||||||  |||||||| | ||||  |||||| |||||||||| |||||||    
T  25977542 gacattcaaccaagcgtaacagctgcaatctctcgatcgattaacggattctagctttttaaactatattat 25977471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 261 - 430
Target Start/End: Complemental strand, 34914379 - 34914210
Alignment:
Q  261 taagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaataaataaagactagatagggtcatttcgtttggggtctga 360  Q
    ||||||| ||| |||| ||||| ||||||| |||| ||| || |||||| | |||||||||||||| |||  |||||    ||||||| || ||||  ||    
T  34914379 taagtgtatggatttaaaatgtgtgtttgtgtaaa-ctatataatctatttgacataaaataaatagagaagagatataaccatttcgcttcgggttaga 34914281  T
Q  361 gacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    || | |||||||||||||||| ||||||  |||||||||| ||||| |||||| |||||||||| |||||||    
T  34914280 gata-tcaaccaagcgtaacagctgcaatctctcgatcaattaacagattctagctttttaaacgatattat 34914210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 9932239 - 9932309
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | ||||||||||||||||| || | ||||||||||| ||||    
T  9932239 cgtatttcataagcattttcacaatatttgtcacattaagtgtttgggtataaattgtttgtttgtgtaaa 9932309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 328 - 430
Target Start/End: Complemental strand, 15643043 - 15642938
Alignment:
Q  328 agactagatagggtcatttcg-tttggggtctgagacactcaaccaagcgtaacaactgcaatc--tcgatcaaataacatattctaactttttaaacaa 424  Q
    |||| ||||||||  |||||| ||||||||| |||||| |||||||||| ||||||||||||||  |||||||||||||  ||| || || ||||||| |    
T  15643043 agacgagatagggaaatttcgctttggggtcagagacaatcaaccaagcataacaactgcaatctttcgatcaaataacggattttacctctttaaacga 15642944  T
Q  425 tattat 430  Q
    ||||||    
T  15642943 tattat 15642938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 26514862 - 26514932
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | ||||||||||||||||| || | ||||||||||| ||||    
T  26514862 cgtatttcataagcattttcacaatatttgtcacattaagtgtttgggtataaattgtttgtttgtgtaaa 26514932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 261 - 430
Target Start/End: Complemental strand, 14271363 - 14271194
Alignment:
Q  261 taagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaataaataaagactagatagggtcatttcgtttggggtctga 360  Q
    ||||||| ||| |||| ||||| ||||||| |||| ||| || | |||| | |||||||||||||| |||  ||||| |  ||||||| || ||||  ||    
T  14271363 taagtgtatggatttaaaatgtgtgtttgtgtaaa-ctatataaactatttgacataaaataaatagagaagagatatgaccatttcgcttcgggttaga 14271265  T
Q  361 gacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    || | |||||||||||||||| ||||||  |||| ||||| ||||| |||||| |||||||||| |||||||    
T  14271264 gata-tcaaccaagcgtaacagctgcaatctctctatcaattaacagattctagctttttaaacgatattat 14271194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 21595968 - 21596032
Alignment:
Q  231 tcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    |||||| |||||||||||||||| | ||||||||||||||||| || | ||||||||||| ||||    
T  21595968 tcataagcattttcacaatatttgtcacattaagtgtttgggtataaattgtttgtttgtgtaaa 21596032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 3539775 - 3539705
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | || |||||||||||||| || | ||||||||||| ||||    
T  3539775 cgtatttcataagcattttcacaatatttgtcacgttaagtgtttgggtataaattgtttgtttgtgtaaa 3539705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 16698637 - 16698567
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | || |||||||||||||| || | ||||||||||| ||||    
T  16698637 cgtatttcataagcattttcacaatatttgtcacgttaagtgtttgggtataaattgtttgtttgtgtaaa 16698567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 25055991 - 25056061
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||||| | |||||||||||| || || | ||||||||||| ||||    
T  25055991 cgtatttcataagcattttcacaatatttatcatattaagtgtttgagtataaattgtttgtttgtgtaaa 25056061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 225 - 430
Target Start/End: Original strand, 32806197 - 32806403
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaa-taa 323  Q
    ||||| |||||| |||||||||||||||| | | ||||||||||||||| ||   ||||||||||| |||| |||  |   ||||   |||||||| |||    
T  32806197 cgtatttcataagcattttcacaatatttgtcatattaagtgtttgggtataatttgtttgtttgtgtaaaactattttc-ctattcgacataaaagtaa 32806295  T
Q  324 ataaagactagatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaatctc--gatcaaataacatattctaactttttaaa 421  Q
    |   |||  ||||||||  |||||| ||| |||| |||||| |||| ||||||||||| ||||||||||  |||| | ||||  |||||| |||||||||    
T  32806296 aacgagaagagatagggctatttcgcttgcggtcagagaca-tcaatcaagcgtaacagctgcaatctctcgatcgattaacgaattctagctttttaaa 32806394  T
Q  422 caatattat 430  Q
    |||||||||    
T  32806395 caatattat 32806403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 5670717 - 5670781
Alignment:
Q  231 tcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    |||||| |||||||||||||||| | || |||||||||||||| || | ||||||||||| ||||    
T  5670717 tcataagcattttcacaatatttgtcacgttaagtgtttgggtataaattgtttgtttgtgtaaa 5670781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 24160688 - 24160758
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||||| | |||||||| |||||| || | | ||||||||| ||||    
T  24160688 cgtatttcataagcattttcacaatatttatcatattaagtggttgggtataaattatttgtttgtgtaaa 24160758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 261 - 422
Target Start/End: Original strand, 8995731 - 8995894
Alignment:
Q  261 taagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaataaataaagactagatagggtcatttcgtttggggtctga 360  Q
    ||||||| ||| |||| ||||||||||||| |||| ||| || | |||| | |||||||||||||| |||  |||||||| ||||||| |||||||| ||    
T  8995731 taagtgtatggatttaaaatgtttgtttgtgtaaacctatataaactatttgacataaaataaatagagaagagatagggccatttcgcttggggtcaga 8995830  T
Q  361 gacactcaaccaagcgtaacaactgcaatct--cgatcaaataacatattctaactttttaaac 422  Q
    |||||||||||||||||||||||||||||||  ||||||||||||  |||||| ||||||||||    
T  8995831 gacactcaaccaagcgtaacaactgcaatctcacgatcaaataacggattctagctttttaaac 8995894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 313 - 430
Target Start/End: Original strand, 3365747 - 3365866
Alignment:
Q  313 acataaaataaataaagactagatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattct 410  Q
    |||||||||||||| |||  |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||  |||||||||||||||  |||||    
T  3365747 acataaaataaatagagaagagatagggtcatttcgcttggggtcagagacactcaaccaagcgtaacaactgcaacctctcgatcaaataacggattct 3365846  T
Q  411 aactttttaaacaatattat 430  Q
    | ||||| |||| |||||||    
T  3365847 agcttttaaaacgatattat 3365866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 343 - 430
Target Start/End: Complemental strand, 9269246 - 9269157
Alignment:
Q  343 atttcgtttggggtctgagacactcaaccaagcgtaacaactgcaatct--cgatcaaataacatattctaactttttaaacaatattat 430  Q
    |||||| |||||||| |||| ||||||||||||||||||||||||||||  ||||||||||||  ||||||||||||||||| |||||||    
T  9269246 atttcgcttggggtcagagatactcaaccaagcgtaacaactgcaatctcacgatcaaataacggattctaactttttaaacgatattat 9269157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 313 - 430
Target Start/End: Complemental strand, 36084398 - 36084280
Alignment:
Q  313 acataaaataaa-taaagactagatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaatct--cgatcaaataacatattc 409  Q
    |||||||||||| || |||  ||||| ||| |||||| ||||||||  ||||||||||||| ||||||||||||||||||  ||||||| ||||||||||    
T  36084398 acataaaataaaatagagaaaagatatggttatttcgcttggggtc--agacactcaaccacgcgtaacaactgcaatctcacgatcaattaacatattc 36084301  T
Q  410 taactttttaaacaatattat 430  Q
    || |||||||||| |||||||    
T  36084300 tagctttttaaacgatattat 36084280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 225 - 430
Target Start/End: Original strand, 11738232 - 11738438
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaa-taa 323  Q
    ||||| |||||| ||||||||||||| || | ||||||||||||||||| || | ||||||||||| |||| |||  |  ||||| | |||||||| |||    
T  11738232 cgtatttcataagcattttcacaataattgtcacattaagtgtttgggtataaattgtttgtttgtgtaaaactatttt-tctatttgacataaaagtaa 11738330  T
Q  324 ataaagactagatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaa 421  Q
    |   |||  ||||||||  |||||| ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||| |||||| |||||||||    
T  11738331 aacgagaagagatagggctatttcgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacagattctagctttttaaa 11738429  T
Q  422 caatattat 430  Q
    | |||||||    
T  11738430 cgatattat 11738438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 317 - 430
Target Start/End: Complemental strand, 13830905 - 13830790
Alignment:
Q  317 aaaataaataaagactagatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaatctc--gatcaaataacatattctaact 414  Q
    |||||||||| |||  |||||| |||||||||||||||||  |||  | |||||||| ||||||||||||||||||  || ||||||||  |||||| ||    
T  13830905 aaaataaatagagaagagatagagtcatttcgtttggggttagagttaatcaaccaaacgtaacaactgcaatctcttgaccaaataacggattctagct 13830806  T
Q  415 ttttaaacaatattat 430  Q
    |||||||| |||||||    
T  13830805 ttttaaacgatattat 13830790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 12167650 - 12167720
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| ||||||||||||||||||||||| | || |||||||||||||| || | ||||||||||| ||||    
T  12167650 cgtatttcataaacattttcacaatatttgtcacgttaagtgtttgggtataaattgtttgtttgtgtaaa 12167720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 20225796 - 20225866
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||| ||||||||||| | ||||||||||||||| || | ||||||||||||||||    
T  20225796 cgtatttcataagcatttttacaatatttatcatattaagtgtttgggtataaattgtttgtttgtataaa 20225866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 317 - 430
Target Start/End: Complemental strand, 39456908 - 39456793
Alignment:
Q  317 aaaataaataaagactagatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaatctc--gatcaaataacatattctaact 414  Q
    |||||||||| ||||  ||||||||||||||  ||||| |  |||  | ||||||||||||||||||||||| |||  |||||||||||| ||||||  |    
T  39456908 aaaataaatagagacgggatagggtcatttcacttgggattagagttaatcaaccaagcgtaacaactgcaacctcatgatcaaataacagattctagat 39456809  T
Q  415 ttttaaacaatattat 430  Q
    ||| |||| |||||||    
T  39456808 tttcaaacgatattat 39456793  T

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Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 40999544 - 40999603
Alignment:
Q  231 tcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgt 290  Q
    |||||| |||||||||||||||| | ||||||||||||||||| || | |||||||||||    
T  40999544 tcataagcattttcacaatatttgtcacattaagtgtttgggtataaattgtttgtttgt 40999603  T

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Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 431775 - 431845
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | || |||||||||||||| || | ||||||||||| ||||    
T  431775 cgtatttcataagcattttcacaatatttgtcacgttaagtgtttgggtataaattgtttgtttgtgtaaa 431845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 13217482 - 13217552
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | ||||||||||||||||| || | ||| ||||||| ||||    
T  13217482 cgtatttcataagcattttcacaatatttgtcacattaagtgtttgggtataaattgtatgtttgtgtaaa 13217552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 16131229 - 16131159
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | | ||||||||||||||| || | ||||||||||| ||||    
T  16131229 cgtatttcataagcattttcacaatatttgtcatattaagtgtttgggtataaattgtttgtttgtgtaaa 16131159  T

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Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 16832217 - 16832287
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | | ||||||||||||||| || | ||||||||||| ||||    
T  16832217 cgtatttcataagcattttcacaatatttgtcatattaagtgtttgggtataaattgtttgtttgtgtaaa 16832287  T

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Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 33491632 - 33491702
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | || |||||||||||||| || | ||||||||||| ||||    
T  33491632 cgtatttcataagcattttcacaatatttgtcacgttaagtgtttgggtataaattgtttgtttgtgtaaa 33491702  T

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Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 39000615 - 39000685
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | || |||||||||||||| || | ||||||||||| ||||    
T  39000615 cgtatttcataagcattttcacaatatttgtcacgttaagtgtttgggtataaattgtttgtttgtgtaaa 39000685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 225 - 290
Target Start/End: Original strand, 38121366 - 38121431
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgt 290  Q
    ||||| |||||| |||||||||||||||| | || |||||||||||||| || | |||||||||||    
T  38121366 cgtatttcataagcattttcacaatatttgtcacgttaagtgtttgggtataaattgtttgtttgt 38121431  T

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Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 333 - 430
Target Start/End: Original strand, 9667238 - 9667336
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  |||||| ||| |||| |||||| |||||||||||||||| || |||  |||||||||| ||||  |||||| |||||||||| |||||||    
T  9667238 agatagggctatttcgcttgcggtcagagaca-tcaaccaagcgtaacagcttcaatctctcgatcaattaacggattctagctttttaaactatattat 9667336  T

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Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 333 - 430
Target Start/End: Original strand, 33491740 - 33491838
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  ||| || ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||  ||||||||||||||||| |||||||    
T  33491740 agatagggctattccgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacggattctaactttttaaactatattat 33491838  T

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Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 366 - 430
Target Start/End: Complemental strand, 15162014 - 15161948
Alignment:
Q  366 tcaaccaagcgtaacaactgcaatc--tcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||| |||||||||| ||||||||  |||||||||||||  |||||| |||||||||| |||||||    
T  15162014 tcaactaagcgtaacagctgcaatcgctcgatcaaataacggattctagctttttaaacgatattat 15161948  T

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Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 343 - 430
Target Start/End: Original strand, 20225914 - 20226002
Alignment:
Q  343 atttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    |||||| |||||||| |||||| |||||||||||||||| || |||  |||||||| | ||||  |||||| |||||||||| |||||||    
T  20225914 atttcgcttggggtcagagaca-tcaaccaagcgtaacagctacaatctctcgatcgattaacggattctagctttttaaacgatattat 20226002  T

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Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 49249791 - 49249721
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | || |||||||||||| | || | ||||||||||| ||||    
T  49249791 cgtatttcataagcattttcacaatatttgtcacgttaagtgtttggatataaattgtttgtttgtgtaaa 49249721  T

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Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 333 - 430
Target Start/End: Original strand, 431883 - 431981
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  ||| || ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||  |||||| |||||||||| |||||||    
T  431883 agatagggctattccgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacgaattctagctttttaaactatattat 431981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 333 - 430
Target Start/End: Original strand, 12167758 - 12167856
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  ||| || ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||  |||||| |||||||||| |||||||    
T  12167758 agatagggctattccgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacggattctagctttttaaactatattat 12167856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 333 - 430
Target Start/End: Original strand, 16832325 - 16832423
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  |||||| ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||  |||||| |||||||| | |||||||    
T  16832325 agatagggctatttcgcttgcggtcggagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacggattctagctttttaagcgatattat 16832423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 333 - 430
Target Start/End: Original strand, 38121474 - 38121572
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  ||| || ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||  |||||| |||||||||| |||||||    
T  38121474 agatagggctattccgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacggattctagctttttaaactatattat 38121572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 260 - 430
Target Start/End: Complemental strand, 41978288 - 41978116
Alignment:
Q  260 ttaagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaataaataaagactagatagggtcatttcgtttggggtctg 359  Q
    |||||||| ||| |||| ||||| | ||||| |||| ||| || | |||| | |||||||||||||| |||  ||||||||  |||||| |||||||| |    
T  41978288 ttaagtgtatggatttaaaatgtgtttttgtgtaaacctatataaactatttgacataaaataaatagagaagagatagggctatttcgcttggggtcag 41978189  T
Q  360 agacactcaaccaagcgtaacaactgcaatct--cgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||  ||||||||||||||||| |||||||    
T  41978188 agacactcaaccaagcgtaacaactgcaatctcacgatcaaataacggattctaactttttaaactatattat 41978116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 225 - 430
Target Start/End: Original strand, 28457311 - 28457517
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaa-taa 323  Q
    ||||| |||||| |||||||||||||||||| ||||||||||||||||| || | ||||||||||| |||| || | |  ||||| | |||||||| |||    
T  28457311 cgtatttcataagcattttcacaatatttatcacattaagtgtttgggtataaattgtttgtttgtgtaaaact-atttttctatttgacataaaagtaa 28457409  T
Q  324 ataaagactagatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaa 421  Q
    |   |||  ||||||||  |||||| |||||||| |||||| |||||||||||||| | ||||||  |||||||||||||||  |||||| ||||| |||    
T  28457410 aatgagaagagatagggctatttcgcttggggtcagagaca-tcaaccaagcgtaatagctgcaatctctcgatcaaataacggattctagcttttaaaa 28457508  T
Q  422 caatattat 430  Q
    | |||||||    
T  28457509 cgatattat 28457517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 226 - 430
Target Start/End: Original strand, 36556997 - 36557202
Alignment:
Q  226 gtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaa-taaa 324  Q
    |||| |||||| |||||||||||||||||| ||||||||||||||||| || | ||||||||||| |||| || | || | |||   |||||||| ||||    
T  36556997 gtatttcataagcattttcacaatatttatcacattaagtgtttgggtataaattgtttgtttgtgtaaaact-attgttttattcgacataaaagtaaa 36557095  T
Q  325 taaagactagatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaac 422  Q
       |||  ||||||||  |||||| |||||||| |||| | ||||| ||||||||||  |||||  |||||||||||||||  |||||| | ||||||||    
T  36557096 acgagaagagatagggctatttcgcttggggtcagagata-tcaacaaagcgtaacagttgcaatctctcgatcaaataacggattctagccttttaaac 36557194  T
Q  423 aatattat 430  Q
     |||||||    
T  36557195 gatattat 36557202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 343 - 430
Target Start/End: Original strand, 9786656 - 9786744
Alignment:
Q  343 atttcgtttggggtctgagacactcaaccaagcgtaacaactgcaatc--tcgatcaaataacatattctaactttttaaacaatattat 430  Q
    |||||| ||||||||  ||||| |||||||||||||||||||||||||  |||||||||||||  |||||| |||||||||| |||||||    
T  9786656 atttcgcttggggtcaaagaca-tcaaccaagcgtaacaactgcaatctatcgatcaaataacggattctagctttttaaacgatattat 9786744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 231 - 430
Target Start/End: Complemental strand, 32523652 - 32523450
Alignment:
Q  231 tcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaatctaaatgatcta--tgtcacataaaataaataa- 327  Q
    ||||||||||||||||||||||||| | ||||||||||||||| || | ||||||||||| |||| |||  |   |||  | | ||||||||| || |      
T  32523652 tcataaacattttcacaatatttatcatattaagtgtttgggtataaagtgtttgtttgtgtaaaactattttc-ctacttatgacataaaattaaaacg 32523554  T
Q  328 agactagatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaatctc--gatcaaataacatattctaactttttaaacaat 425  Q
    | |  ||||||||  |||||| ||| |||| |||||| |||||||||||||||| ||||||||||  |||| | |||||||||||| |||||||||| ||    
T  32523553 ataagagatagggctatttcgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacatattctagctttttaaacgat 32523455  T
Q  426 attat 430  Q
    |||||    
T  32523454 attat 32523450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 225 - 430
Target Start/End: Complemental strand, 43992241 - 43992036
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaataaa 324  Q
    ||||| |||||| |||||||||||||||| | ||||||||||||||||| || | ||||||||||   ||| || | |   |||    ||||||| ||||    
T  43992241 cgtatttcataagcattttcacaatatttgtcacattaagtgtttgggtataaattgtttgtttgcgcaaaact-attttcctaatcgacataaagtaaa 43992143  T
Q  325 taaagactagatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaac 422  Q
       |||  ||||||||  |||||| ||| |||| |||||| |||| ||||||||||| ||||||  |||||||||| |||||||||||| ||||||||||    
T  43992142 acgagaagagatagggctatttcgcttgcggtcagagaca-tcaatcaagcgtaacatctgcaatctctcgatcaattaacatattctagctttttaaac 43992044  T
Q  423 aatattat 430  Q
     |||||||    
T  43992043 gatattat 43992036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 366 - 430
Target Start/End: Complemental strand, 21160553 - 21160487
Alignment:
Q  366 tcaaccaagcgtaacaactgcaatctc--gatcaaataacatattctaactttttaaacaatattat 430  Q
    |||||||||||||||| ||||||||||  |||||| ||||| ||||||||||||||||| |||||||    
T  21160553 tcaaccaagcgtaacagctgcaatctctcgatcaattaacagattctaactttttaaacgatattat 21160487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 27258112 - 27258042
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||||| | ||||||||||||||| || | ||||||||||| ||||    
T  27258112 cgtatttcataagcattttcacaatatttatcatattaagtgtttgggtataaagtgtttgtttgtgtaaa 27258042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 29224442 - 29224372
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | ||||||||||||||||| || | ||||||||||| ||||    
T  29224442 cgtatttcataagcattttcacaatatttgtcacattaagtgtttgggtataaattgtttgtttgtgtaaa 29224372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 29337741 - 29337671
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | ||||||||||||||||| || | ||||||||||| ||||    
T  29337741 cgtatttcataagcattttcacaatatttgtcacattaagtgtttgggtataaattgtttgtttgtgtaaa 29337671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 8679235 - 8679299
Alignment:
Q  231 tcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    |||||| |||||||||||||||| | ||||||||||||||||| || | ||||||||||| ||||    
T  8679235 tcataagcattttcacaatatttgtcacattaagtgtttgggtataaattgtttgtttgtgtaaa 8679299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 366 - 430
Target Start/End: Original strand, 24662702 - 24662768
Alignment:
Q  366 tcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    |||||||||||||||||||||||  |||||| ||||||||  ||||||||| ||||||| |||||||    
T  24662702 tcaaccaagcgtaacaactgcaatctctcgaccaaataacggattctaactctttaaacgatattat 24662768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 225 - 430
Target Start/End: Original strand, 36667322 - 36667528
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaa-taa 323  Q
    ||||| |||||| |||||||||||||||| | ||||||||||||||  | || | ||||||||||| |||| |||  |   ||||   |||||||| |||    
T  36667322 cgtatttcataagcattttcacaatatttgtcacattaagtgtttgaatataaattgtttgtttgtgtaaaactattttc-ctattcgacataaaagtaa 36667420  T
Q  324 ataaagactagatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaa 421  Q
    |   |||  ||||||||  |||||| |||||||| |||||| |||||||||||||||| ||| ||  |||||||| | ||||  |||||| |||||||||    
T  36667421 aacgagaagagatagggcaatttcgcttggggtcagagaca-tcaaccaagcgtaacagctgaaatctctcgatcgattaacggattctagctttttaaa 36667519  T
Q  422 caatattat 430  Q
    | |||||||    
T  36667520 cgatattat 36667528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 333 - 430
Target Start/End: Original strand, 13229884 - 13229982
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  |||||| ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||  |||||| |||||||||| |||||||    
T  13229884 agatagggctatttcgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacggattctagctttttaaacgatattat 13229982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 23924466 - 23924514
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggt 273  Q
    ||||| |||||| |||||||||||||||| | |||||||||||||||||    
T  23924466 cgtatttcataagcattttcacaatatttgtcacattaagtgtttgggt 23924514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 226 - 286
Target Start/End: Complemental strand, 28006811 - 28006751
Alignment:
Q  226 gtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgt 286  Q
    |||| |||||| |||||||||||||||||| | ||||||||||||||| || | |||||||    
T  28006811 gtatttcataagcattttcacaatatttatcatattaagtgtttgggtataaattgtttgt 28006751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 42700414 - 42700478
Alignment:
Q  231 tcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    |||||| |||||||||||||||| | |||||||||||||| || || | ||||||||||| ||||    
T  42700414 tcataagcattttcacaatatttgtcacattaagtgtttgagtataaattgtttgtttgtgtaaa 42700478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 14701372 - 14701302
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||| ||||||||| ||||| |||||||| || || | ||||||||||| ||||    
T  14701372 cgtatttcataagcattttcataatatttatcacattgagtgtttgagtataaattgtttgtttgtgtaaa 14701302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 36039696 - 36039766
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||  |||||||||||||||| | || |||||||||||||| || | ||||||||||| ||||    
T  36039696 cgtatttcatatgcattttcacaatatttgtcacgttaagtgtttgggtataaattgtttgtttgtgtaaa 36039766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 333 - 430
Target Start/End: Original strand, 8679337 - 8679435
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||| || | | ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||| | |||||| |||||||||| |||||||    
T  8679337 agatagggttatctagcttgcggtcggagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaatagattctatctttttaaacgatattat 8679435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 5e-33; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 261 - 430
Target Start/End: Original strand, 37251375 - 37251545
Alignment:
Q  261 taagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaataaataaagactagatagggtcatttcgtttggggtctga 360  Q
    ||||||| ||| |||| ||||| ||||||| |||| ||| || | |||| | |||||||||||||| |||  |||||||||||||||| ||| |||| ||    
T  37251375 taagtgtatggatttaaaatgtgtgtttgtgtaaa-ctatattaactatttgacataaaataaatagagaagagatagggtcatttcgcttgaggtcaga 37251473  T
Q  361 gacactcaaccaagcgtaacaactgcaatct--cgatcaaataacatattctaactttttaaacaatattat 430  Q
    |||||||||||||||||||||||| ||||||  ||||||||||||| |||||| |||||||||| |||||||    
T  37251474 gacactcaaccaagcgtaacaactacaatctcacgatcaaataacagattctagctttttaaactatattat 37251545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 16904043 - 16904113
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | ||||||||||||||||| || | ||||||||||| ||||    
T  16904043 cgtatttcataagcattttcacaatatttgtcacattaagtgtttgggtataaattgtttgtttgtgtaaa 16904113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 27166532 - 27166602
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | ||||||||||||||||| || | ||||||||||| ||||    
T  27166532 cgtatttcataagcattttcacaatatttgtcacattaagtgtttgggtataaattgtttgtttgtgtaaa 27166602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 9405152 - 9405082
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | || |||||||||||||| || | ||||||||||| ||||    
T  9405152 cgtatttcataagcattttcacaatatttgtcacgttaagtgtttgggtataaattgtttgtttgtgtaaa 9405082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 11767482 - 11767412
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | || |||||||||||||| || | ||||||||||| ||||    
T  11767482 cgtatttcataagcattttcacaatatttgtcacgttaagtgtttgggtataaattgtttgtttgtgtaaa 11767412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 24836450 - 24836380
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | || |||||||||||||| || | ||||||||||| ||||    
T  24836450 cgtatttcataagcattttcacaatatttgtcacgttaagtgtttgggtataaattgtttgtttgtgtaaa 24836380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 30606510 - 30606580
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | |||||||||||| |||| || | ||||||||||| ||||    
T  30606510 cgtatttcataagcattttcacaatatttgtcacattaagtgttagggtataaattgtttgtttgtgtaaa 30606580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 33435330 - 33435260
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | || |||||||||||||| || | ||||||||||| ||||    
T  33435330 cgtatttcataagcattttcacaatatttgtcacgttaagtgtttgggtataaattgtttgtttgtgtaaa 33435260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 34457023 - 34456953
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | || |||||||||||||| || | ||||||||||| ||||    
T  34457023 cgtatttcataagcattttcacaatatttgtcacgttaagtgtttgggtataaattgtttgtttgtgtaaa 34456953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 232 - 288
Target Start/End: Complemental strand, 6270611 - 6270555
Alignment:
Q  232 cataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgttt 288  Q
    ||||| |||||||||||||||| | ||||||||||||||||| || | |||||||||    
T  6270611 cataagcattttcacaatatttgtcacattaagtgtttgggtataaattgtttgttt 6270555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 333 - 430
Target Start/End: Complemental strand, 7315824 - 7315726
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  ||| || ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||  ||||||||||||||||| |||||||    
T  7315824 agatagggctattccgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacggattctaactttttaaactatattat 7315726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 7315932 - 7315862
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | || |||||||||||||| || | ||||| ||||| ||||    
T  7315932 cgtatttcataagcattttcacaatatttgtcacgttaagtgtttgggtataaattgtttatttgtgtaaa 7315862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 11722710 - 11722780
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | |  |||||||||||||| || | ||||||||||| ||||    
T  11722710 cgtatttcataagcattttcacaatatttgtcatgttaagtgtttgggtataaattgtttgtttgtgtaaa 11722780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 333 - 430
Target Start/End: Complemental strand, 9405044 - 9404946
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  ||| || ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||  |||||| |||||||||| |||||||    
T  9405044 agatagggctattccgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacggattctagctttttaaactatattat 9404946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 333 - 430
Target Start/End: Complemental strand, 11767374 - 11767276
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  ||| || ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||  |||||| |||||||||| |||||||    
T  11767374 agatagggctattccgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacggattctagctttttaaactatattat 11767276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 333 - 430
Target Start/End: Complemental strand, 24836342 - 24836244
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  ||| || ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||  |||||| |||||||||| |||||||    
T  24836342 agatagggctattccgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacggattctagctttttaaactatattat 24836244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 333 - 430
Target Start/End: Original strand, 30606618 - 30606716
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  ||| || ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||  |||||| |||||||||| |||||||    
T  30606618 agatagggctattccgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacggattctagctttttaaactatattat 30606716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 362 - 403
Target Start/End: Original strand, 35383225 - 35383268
Alignment:
Q  362 acactcaaccaagcgtaacaactgcaatct--cgatcaaataac 403  Q
    |||||||| |||||||||||||||||||||  ||||||||||||    
T  35383225 acactcaatcaagcgtaacaactgcaatctcacgatcaaataac 35383268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0859 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: scaffold0859
Description:

Target: scaffold0859; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 261 - 430
Target Start/End: Original strand, 4815 - 4987
Alignment:
Q  261 taagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaataaataaagactagatagggtcatttcgtttggggtctga 360  Q
    ||||||| ||| |||| ||||| ||||||| |||| ||| || | |||| | |||||||||||||| |||  |||||||| ||||||| |||||||| ||    
T  4815 taagtgtatggatttaaaatgtgtgtttgtgtaaacctatataaactatttgacataaaataaatagagaagagatagggccatttcgcttggggtcaga 4914  T
Q  361 gacactcaaccaagcgtaacaactgcaatct--cgatcaaataacatattctaac-tttttaaacaatattat 430  Q
    |||||||||||||||||||||||||||||||  ||||||||||||  |||||| | ||||||||| |||||||    
T  4915 gacactcaaccaagcgtaacaactgcaatctcacgatcaaataacggattctagcttttttaaacgatattat 4987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 3e-28; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 313 - 430
Target Start/End: Complemental strand, 12538804 - 12538685
Alignment:
Q  313 acataaaataaataaagactagatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaatct--cgatcaaataacatattct 410  Q
    |||||||||||||| |||  ||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||  |||||||||||   |||||    
T  12538804 acataaaataaatagagaaaagataaggtcatttcgcttggggtcagagacactcaaccaagcgtaacaactgcaatctcacgatcaaataatggattct 12538705  T
Q  411 aactttttaaacaatattat 430  Q
    | |||||||||| |||||||    
T  12538704 agctttttaaacgatattat 12538685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 261 - 430
Target Start/End: Original strand, 22222144 - 22222315
Alignment:
Q  261 taagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaataaataaagactagatagggtcatttcgtttggggtctga 360  Q
    ||||||| ||| |||| ||||||||||||| ||||  || || | |||| | |||||||||||||| |||  |||||||| || |||  |||||||| ||    
T  22222144 taagtgtatggatttaaaatgtttgtttgtgtaaacttatataaactatttgacataaaataaatagagaagagatagggccaattcacttggggtcaga 22222243  T
Q  361 gacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    || |||||||||||||||||||||||||  || ||||||||||||| |||||| |||||||||| |||||||    
T  22222244 gatactcaaccaagcgtaacaactgcaatttcacgatcaaataacagattctagctttttaaacgatattat 22222315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 261 - 430
Target Start/End: Original strand, 22228486 - 22228657
Alignment:
Q  261 taagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaataaataaagactagatagggtcatttcgtttggggtctga 360  Q
    ||||||| ||| |||| ||||||||||||| ||||  || || | |||| | |||||||||||||| |||  |||||||| || |||  |||||||| ||    
T  22228486 taagtgtatggatttaaaatgtttgtttgtgtaaacttatataaactatttgacataaaataaatagagaagagatagggccaattcacttggggtcaga 22228585  T
Q  361 gacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    || |||||||||||||||||||||||||  || ||||||||||||| |||||| |||||||||| |||||||    
T  22228586 gatactcaaccaagcgtaacaactgcaatttcacgatcaaataacagattctagctttttaaacgatattat 22228657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 261 - 430
Target Start/End: Original strand, 22226977 - 22227148
Alignment:
Q  261 taagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaataaataaagactagatagggtcatttcgtttggggtctga 360  Q
    ||||||| ||| |||| ||||||||||||| ||||  || || | |||| | |||||||||||||| |||  |||||||  || |||  |||||||| ||    
T  22226977 taagtgtatggatttaaaatgtttgtttgtgtaaacttatataaactattttacataaaataaatagagaagagataggaccaattcacttggggtcaga 22227076  T
Q  361 gacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    || |||||||||||||||||||||||||  || ||||||||||||| |||||| |||||||||| |||||||    
T  22227077 gatactcaaccaagcgtaacaactgcaatttcacgatcaaataacagattctagctttttaaacgatattat 22227148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 261 - 430
Target Start/End: Original strand, 22233319 - 22233490
Alignment:
Q  261 taagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaataaataaagactagatagggtcatttcgtttggggtctga 360  Q
    ||||||| ||| |||| ||||||||||||| ||||  || || | |||| | |||||||||||||| |||  |||||||  || |||  |||||||| ||    
T  22233319 taagtgtatggatttaaaatgtttgtttgtgtaaacttatataaactattttacataaaataaatagagaagagataggaccaattcacttggggtcaga 22233418  T
Q  361 gacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    || |||||||||||||||||||||||||  || ||||||||||||| |||||| |||||||||| |||||||    
T  22233419 gatactcaaccaagcgtaacaactgcaatttcacgatcaaataacagattctagctttttaaacgatattat 22233490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 273 - 430
Target Start/End: Original strand, 22242724 - 22242883
Alignment:
Q  273 tttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaataaataaagactagatagggtcatttcgtttggggtctgagacactcaacca 372  Q
    |||| ||||| ||||||| |||| ||| || | |||| | |||||||||||||| |||  |||||||||| ||||| || ||||| ||||||||||||||    
T  22242724 tttaaaatgtgtgtttgtgtaaacctatataaactatttgacataaaataaatagagaagagatagggtcctttcgcttcgggtcagagacactcaacca 22242823  T
Q  373 agcgtaacaactgcaatct--cgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||| |||||||||||||||  ||||||||||||  |||||  |||||||||| |||||||    
T  22242824 agcataacaactgcaatctcgcgatcaaataacggattctggctttttaaacgatattat 22242883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 333 - 420
Target Start/End: Original strand, 13848869 - 13848958
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaa 420  Q
    ||||||||  |||||| |||||||| ||||||||||||||||||||||||||||||  |||||||||||||||  |||||| ||||||||    
T  13848869 agatagggctatttcgcttggggtcagagacactcaaccaagcgtaacaactgcaacctctcgatcaaataacggattctagctttttaa 13848958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 261 - 430
Target Start/End: Complemental strand, 17993557 - 17993388
Alignment:
Q  261 taagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaataaa-taaagactagatagggtcatttcgtttggggtctg 359  Q
    ||||||| ||| |||| ||||||||||||| |||| ||| |  | |||| | |||||||||||| || |||  |||||||  ||||||| |||||||| |    
T  17993557 taagtgtatggatttaaaatgtttgtttgtgtaaacctata--aactatttgacataaaataaagtagagaagagataggaccatttcgcttggggtcag 17993460  T
Q  360 agacactcaaccaagcgtaacaactgcaatctc--gatcaaataacatattctaactttttaaacaatattat 430  Q
    ||| | |||||||||||||||| ||||||||||  |||||||||||  |||||| |||||||||| |||||||    
T  17993459 agata-tcaaccaagcgtaacagctgcaatctctcgatcaaataacgaattctagctttttaaacgatattat 17993388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 317 - 430
Target Start/End: Complemental strand, 1607906 - 1607791
Alignment:
Q  317 aaaataaataaagactagatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaatctc--gatcaaataacatattctaact 414  Q
    |||||||||| |||  |||||||||||||||| |||||||  ||   | |||||||||||||||||||||||||||  || ||||||||  | |||||||    
T  1607906 aaaataaatagagaagagatagggtcatttcgcttggggttagaattaatcaaccaagcgtaacaactgcaatctcttgaccaaataacggaatctaact 1607807  T
Q  415 ttttaaacaatattat 430  Q
    |||||||| |||||||    
T  1607806 ttttaaacgatattat 1607791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 225 - 392
Target Start/End: Complemental strand, 16959279 - 16959112
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaa-taa 323  Q
    ||||| |||||| |||||||||||||||||| ||||||||||||||||| || | ||||||||||| |||| |||  | | ||||   |||||||| |||    
T  16959279 cgtatttcataagcattttcacaatatttatcacattaagtgtttgggtataaattgtttgtttgtgtaaaactattttaactattcgacataaaagtaa 16959180  T
Q  324 ataaagactagatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaatctc 392  Q
    |   |||| ||||||||  |||||| |||||||   ||| | |||||||||||||||| ||||||||||    
T  16959179 aacgagacgagatagggctatttcgcttggggttaaagata-tcaaccaagcgtaacagctgcaatctc 16959112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 342 - 430
Target Start/End: Original strand, 4861502 - 4861591
Alignment:
Q  342 catttcgtttggggtctgagacactcaaccaagcgtaacaactgcaatctc--gatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||| |||||||| |||| || ||||||||||||||| ||||||||||  |||||||||||  |||||| |||||||||| |||||||    
T  4861502 catttcgcttggggtcagagatac-caaccaagcgtaacagctgcaatctctcgatcaaataacggattctagctttttaaacgatattat 4861591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 11308421 - 11308491
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | ||||||||||||||||| || | ||||||||||| ||||    
T  11308421 cgtatttcataagcattttcacaatatttgtcacattaagtgtttgggtataaattgtttgtttgtgtaaa 11308491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 22181304 - 22181234
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | ||||||||||||||||| || | ||||||||||| ||||    
T  22181304 cgtatttcataagcattttcacaatatttgtcacattaagtgtttgggtataaattgtttgtttgtgtaaa 22181234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 28370821 - 28370751
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | ||||||||||||||||| || | ||||||||||| ||||    
T  28370821 cgtatttcataagcattttcacaatatttgtcacattaagtgtttgggtataaattgtttgtttgtgtaaa 28370751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 9067601 - 9067671
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | || |||||||||||||| || | ||||||||||| ||||    
T  9067601 cgtatttcataagcattttcacaatatttgtcactttaagtgtttgggtataaattgtttgtttgtgtaaa 9067671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 28925577 - 28925647
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| ||||||| |||||||||| || |||||||||||||| || | ||||||||||| ||||    
T  28925577 cgtatttcataagcattttcccaatatttatcacgttaagtgtttgggtataaattgtttgtttgtgtaaa 28925647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 41576765 - 41576835
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | || |||||||||||||| || | ||||||||||| ||||    
T  41576765 cgtatttcataagcattttcacaatatttgtcacgttaagtgtttgggtataaattgtttgtttgtgtaaa 41576835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 333 - 430
Target Start/End: Original strand, 11308529 - 11308627
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaatc--tcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  ||| || ||| |||| |||||| |||||||||||||||||||||||||  |||||| | ||||  |||||| |||||||||| |||||||    
T  11308529 agatagggctattccgcttgcggtcagagaca-tcaaccaagcgtaacaactgcaatctttcgatcgattaacggattctagctttttaaactatattat 11308627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 333 - 430
Target Start/End: Complemental strand, 27348646 - 27348548
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaatctc--gatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  ||| || ||| |||| |||||| |||||||||||||||| ||||||||||  |||||| ||||  |||||| |||||||||| |||||||    
T  27348646 agatagggctattccgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctcttgatcaattaacggattctagctttttaaaccatattat 27348548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 333 - 430
Target Start/End: Original strand, 34006315 - 34006413
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  ||| || ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||| |||||| |||||||||| |||||||    
T  34006315 agatagggctattccgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacagattctagctttttaaactatattat 34006413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 366 - 430
Target Start/End: Complemental strand, 13510551 - 13510485
Alignment:
Q  366 tcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    |||||||||||||||| ||||||  |||||||||| ||||  |||||| |||||||||| |||||||    
T  13510551 tcaaccaagcgtaacagctgcaatctctcgatcaattaacggattctacctttttaaacgatattat 13510485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 366 - 430
Target Start/End: Complemental strand, 13600081 - 13600015
Alignment:
Q  366 tcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    |||||||||||||||| ||||||  |||||||||| ||||  |||||| |||||||||| |||||||    
T  13600081 tcaaccaagcgtaacagctgcaatctctcgatcaattaacggattctacctttttaaacgatattat 13600015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 3299529 - 3299459
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| ||||||| |||||||| | || |||||||||||||| || | ||||||||||| ||||    
T  3299529 cgtatttcataagcattttcgcaatatttgttacgttaagtgtttgggtataaattgtttgtttgtgtaaa 3299459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 8742717 - 8742787
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | || |||| ||||||||| || | ||||||||||| ||||    
T  8742717 cgtatttcataagcattttcacaatatttgtcacgttaaatgtttgggtataaattgtttgtttgtgtaaa 8742787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 333 - 430
Target Start/End: Complemental strand, 3299421 - 3299323
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  ||| || ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||  |||||| |||||||||| |||||||    
T  3299421 agatagggctattccgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacggattctagctttttaaactatattat 3299323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 333 - 430
Target Start/End: Original strand, 9067709 - 9067807
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  ||| || ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||  |||||| |||||||||| |||||||    
T  9067709 agatagggctattccgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacggattctagctttttaaactatattat 9067807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 333 - 430
Target Start/End: Complemental strand, 28370713 - 28370615
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  ||| || ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||  |||||| |||||||||| |||||||    
T  28370713 agatagggctattccgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacggattctagctttttaaactatattat 28370615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 333 - 430
Target Start/End: Original strand, 28925685 - 28925783
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  ||| || ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||  |||||| |||||||||| |||||||    
T  28925685 agatagggctattccgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacggattctagctttttaaactatattat 28925783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 314 - 430
Target Start/End: Complemental strand, 2357800 - 2357682
Alignment:
Q  314 cataaaataaataaagactagatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaatct--cgatcaaataacatattcta 411  Q
    ||||||||||||| |||  ||||  || ||||||| |||||||| |||||||||||||||||||||||||||||||||  ||||||||||||  ||||||    
T  2357800 cataaaataaatagagaagagatgtggccatttcgcttggggtcagagacactcaaccaagcgtaacaactgcaatctcacgatcaaataacggattcta 2357701  T
Q  412 actttttaaacaatattat 430  Q
    ||||||||||| |||||||    
T  2357700 actttttaaacgatattat 2357682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 225 - 430
Target Start/End: Complemental strand, 33248717 - 33248511
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaa-taa 323  Q
    ||||| |||||| |||||||||||||||||| ||||||||||||||||| || | ||||||||||| |||| || | |   ||||   |||||||| |||    
T  33248717 cgtatttcataagcattttcacaatatttatcacattaagtgtttgggtataaattgtttgtttgtgtaaaact-attttcctattcgacataaaagtaa 33248619  T
Q  324 ataaagactagatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaa 421  Q
    |   |||  ||||||||  |||||| |||||||| |||| | ||||||||||||||||  |||||  |||||||||||||||  |||||| |||||||||    
T  33248618 aatgagaagagatagggctatttcgcttggggtcagagata-tcaaccaagcgtaacagatgcaatctctcgatcaaataacgaattctagctttttaaa 33248520  T
Q  422 caatattat 430  Q
    | |||||||    
T  33248519 cgatattat 33248511  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 225 - 430
Target Start/End: Original strand, 7652656 - 7652862
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaa-taa 323  Q
    ||||| |||||| |||||||||||||||| | ||||||||||||||||| || | ||||||||||| |||| || |||   |||    |||||||| |||    
T  7652656 cgtatttcataagcattttcacaatatttgtcacattaagtgtttgggtataaattgtttgtttgtgtaaaact-aatttcctaatcgacataaaagtaa 7652754  T
Q  324 ataaagactagatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaa 421  Q
    |   |||  ||||||||  |||||| ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||  |||||| |||||||||    
T  7652755 aacgagaagagatagggctatttcgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacggattctagctttttaaa 7652853  T
Q  422 caatattat 430  Q
    | |||||||    
T  7652854 ctatattat 7652862  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 261 - 430
Target Start/End: Original strand, 1231962 - 1232131
Alignment:
Q  261 taagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaataaataaagactagatagggtcatttcgtttggggtctga 360  Q
    ||||||| ||| |||| ||||| ||||||| |||| ||| || | |||| | |||||||||||||| |||  ||||| |  ||| ||| |||||||  ||    
T  1231962 taagtgtatggatttaaaatgtgtgtttgtgtaaa-ctatataaactatttgacataaaataaatagagaagagatatgaccatatcgcttggggttaga 1232060  T
Q  361 gacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    || | |||||||||||||||| ||||||  |||||||||| ||||| |||||| |||||||||| |||||||    
T  1232061 gata-tcaaccaagcgtaacagctgcaatctctcgatcaattaacagattctagctttttaaacgatattat 1232131  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 342 - 430
Target Start/End: Complemental strand, 23194530 - 23194441
Alignment:
Q  342 catttcgtttggggtctgagacactcaaccaagcgtaacaactgcaatctc--gatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||| |||||||| |||| | |||||||||||||||| ||||||||||  |||||||||||  |||||| |||||||||| |||||||    
T  23194530 catttcgcttggggtcagagata-tcaaccaagcgtaacagctgcaatctctcgatcaaataacggattctagctttttaaacgatattat 23194441  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 11260221 - 11260291
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | ||||||||||||||||| || | ||||||||||| ||||    
T  11260221 cgtatttcataagcattttcacaatatttgtcacattaagtgtttgggtataaattgtttgtttgtgtaaa 11260291  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 36468870 - 36468940
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| || ||||||||||||||| ||||||||||||||||| || | ||||||||||| ||||    
T  36468870 cgtatttcataagcactttcacaatatttatcacattaagtgtttgggtataaattgtttgtttgtgtaaa 36468940  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 333 - 430
Target Start/End: Original strand, 20962798 - 20962896
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  |||||| ||| |||| |||||| |||||||||||||||||||||||  |||||||| | ||||  |||||| |||||||||| |||||||    
T  20962798 agatagggctatttcgcttgcggtcggagaca-tcaaccaagcgtaacaactgcaatctctcgatcgattaacggattctagctttttaaacgatattat 20962896  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 22098702 - 22098638
Alignment:
Q  231 tcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||||||||||||||||||||| | || |||||||||||||| || | ||||||||||| ||||    
T  22098702 tcataaacattttcacaatatttgtcacgttaagtgtttgggtataaattgtttgtttgtgtaaa 22098638  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 333 - 430
Target Start/End: Original strand, 24899471 - 24899570
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||| || ||||||| ||||||||  ||| |||| ||||||||||||||||||||  || ||||||||||||  ||||| | ||||||||| |||||||    
T  24899471 agatatggccatttcgcttggggtcatagatactcgaccaagcgtaacaactgcaatttcacgatcaaataacggattctgaatttttaaacgatattat 24899570  T

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Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 333 - 430
Target Start/End: Original strand, 24905937 - 24906036
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||| || ||||||| ||||||||  ||| |||| ||||||||||||||||||||  || ||||||||||||  ||||| | ||||||||| |||||||    
T  24905937 agatatggccatttcgcttggggtcatagatactcgaccaagcgtaacaactgcaatttcacgatcaaataacggattctgaatttttaaacgatattat 24906036  T

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Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 4742436 - 4742506
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | ||||||||||||||||| || | ||||| ||||| ||||    
T  4742436 cgtatttcataagcattttcacaatatttgtcacattaagtgtttgggtataaattgtttttttgtgtaaa 4742506  T

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Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 10385504 - 10385574
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | || |||||||||||||| || | ||||||||||| ||||    
T  10385504 cgtatttcataagcattttcacaatatttgtcacgttaagtgtttgggtataaattgtttgtttgtgtaaa 10385574  T

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Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 23383032 - 23382962
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| |||| |||||||||||||| |  | ||||||||||| ||||    
T  23383032 cgtatttcataagcattttcacaatatttgtgacgttaagtgtttgggtattaattgtttgtttgtgtaaa 23382962  T

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Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 343 - 430
Target Start/End: Complemental strand, 27104602 - 27104513
Alignment:
Q  343 atttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    |||| |||||||||| |||||||||||| |||||||||| || |||  ||||| |||||||||  |||||| || ||||||| |||||||    
T  27104602 attttgtttggggtcagagacactcaactaagcgtaacagctacaacctctcgttcaaataacgaattctagctatttaaacgatattat 27104513  T

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Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 27849985 - 27850055
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | || |||||||||||||| || | ||||||||||| ||||    
T  27849985 cgtatttcataagcattttcacaatatttgtcacgttaagtgtttgggtataaattgtttgtttgtgtaaa 27850055  T

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Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 52307519 - 52307589
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | || |||||||||||||| || | ||||||||||| ||||    
T  52307519 cgtatttcataagcattttcacaatatttgtcacgttaagtgtttgggtataaattgtttgtttgtgtaaa 52307589  T

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Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 333 - 430
Target Start/End: Complemental strand, 8626243 - 8626145
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  |||||| ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||  |||||| |||||||||| |||||||    
T  8626243 agatagggctatttcgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacggattctagctttttaaactatattat 8626145  T

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Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 8626345 - 8626281
Alignment:
Q  231 tcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    |||||| |||||||||||||||| | || |||||||||||||| || | ||||||||||| ||||    
T  8626345 tcataagcattttcacaatatttgtcacgttaagtgtttgggtataaattgtttgtttgtgtaaa 8626281  T

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Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 333 - 430
Target Start/End: Original strand, 10385612 - 10385710
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  |||||| ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||  |||||| |||||||||| |||||||    
T  10385612 agatagggctatttcgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacggattctagctttttaaactatattat 10385710  T

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Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 333 - 430
Target Start/End: Complemental strand, 20837713 - 20837615
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  ||| || ||| |||| |||||| |||||||||||||||||||||||  |||||||| | ||||  |||||| |||||||||| |||||||    
T  20837713 agatagggctattccgcttgtggtcagagaca-tcaaccaagcgtaacaactgcaatctctcgatcgattaacggattctagctttttaaactatattat 20837615  T

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Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 333 - 430
Target Start/End: Complemental strand, 23394189 - 23394091
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||| ||| || ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||  |||||| |||||||||| |||||||    
T  23394189 agatagggttattccgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacggattctagctttttaaactatattat 23394091  T

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Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 333 - 430
Target Start/End: Complemental strand, 37023310 - 37023212
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  |||||| ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||  || |||||||||||||| |||||||    
T  37023310 agatagggctatttcgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacggatcctaactttttaaacgatattat 37023212  T

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Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 333 - 430
Target Start/End: Complemental strand, 45528267 - 45528169
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  |||||| ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||  |||||| |||||||||| |||||||    
T  45528267 agatagggctatttcgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacggattctagctttttaaacgatattat 45528169  T

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Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 48167625 - 48167673
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggt 273  Q
    ||||| |||||| |||||||||||||||| | |||||||||||||||||    
T  48167625 cgtatttcataagcattttcacaatatttgtcacattaagtgtttgggt 48167673  T

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Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 20962692 - 20962760
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||||| ||||  ||||||||||| || | ||||||||||| ||||    
T  20962692 cgtatttcataagcattttcacaatatttatcacat--agtgtttgggtataaattgtttgtttgtgtaaa 20962760  T

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Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 9990123 - 9990053
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| ||||||| |||||||| | || |||||||||||||| || | ||||||||||| ||||    
T  9990123 cgtatttcataagcattttcgcaatatttgtcacgttaagtgtttgggtataaattgtttgtttgtgtaaa 9990053  T

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Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 343 - 430
Target Start/End: Original strand, 27850103 - 27850191
Alignment:
Q  343 atttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    |||||| ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||  |||||| |||||||||| |||||||    
T  27850103 atttcgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacggattctagctttttaaactatattat 27850191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 295
Target Start/End: Complemental strand, 20837820 - 20837751
Alignment:
Q  226 gtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    |||| |||||| |||||| ||||||||| | || |||||||||||||| || | ||||||||||| ||||    
T  20837820 gtatttcataagcatttttacaatatttgtcacgttaagtgtttgggtataaattgtttgtttgtgtaaa 20837751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 333 - 430
Target Start/End: Complemental strand, 9990015 - 9989917
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  ||| || ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||  |||||| |||||||||| |||||||    
T  9990015 agatagggctattccgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacggattctagctttttaaactatattat 9989917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 333 - 430
Target Start/End: Complemental strand, 22098286 - 22098188
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||| ||| || ||| ||||  ||||| |||||||||||||||| ||||||  |||||||| | ||||  ||||||||||||||||  |||||||    
T  22098286 agatagggttattccgcttgcggtcaaagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacggattctaactttttaaattatattat 22098188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 333 - 430
Target Start/End: Complemental strand, 22098600 - 22098502
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||| ||| || ||| ||||  ||||| |||||||||||||||| ||||||  |||||||| | ||||  ||||||||||||||||  |||||||    
T  22098600 agatagggttattccgcttgcggtcaaagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacggattctaactttttaaattatattat 22098502  T

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Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 333 - 430
Target Start/End: Original strand, 52307627 - 52307725
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  ||| || ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||  |||||| |||||||||| |||||||    
T  52307627 agatagggctattccgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacggattctagctttttaaactatattat 52307725  T

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Target: scaffold0505 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 261 - 430
Target Start/End: Original strand, 454 - 624
Alignment:
Q  261 taagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaataaataaagactagatagggtcatttcgtttggggtctga 360  Q
    ||||||| ||| |||| ||||||||||||| |||| ||| || | |||| | ||||||||||||||||||   |||| |  ||||||| | |||||| ||    
T  454 taagtgtatggatttaaaatgtttgtttgtgtaaa-ctatataaactatttgacataaaataaataaagaagggatatgaccatttcgctcggggtcaga 552  T
Q  361 gacactcaaccaagcgtaacaactgcaatct--cgatcaaataacatattctaactttttaaacaatattat 430  Q
    |||||||||||||||||||||||||||||||  |||||||||||   |||||| ||||||||| ||||||||    
T  553 gacactcaaccaagcgtaacaactgcaatctcacgatcaaataatggattctagctttttaaaaaatattat 624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 313 - 430
Target Start/End: Original strand, 34844 - 34963
Alignment:
Q  313 acataaaataaataaagactagatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaatct--cgatcaaataacatattct 410  Q
    |||||||||| ||| |||  ||||| |  ||||||| |||||||| |||||||||||||||||||||||||||||||||  ||||||||||||  |||||    
T  34844 acataaaatatatagagaagagatatgaccatttcgcttggggtcagagacactcaaccaagcgtaacaactgcaatctcacgatcaaataacggattct 34943  T
Q  411 aactttttaaacaatattat 430  Q
    | ||||||||||||||||||    
T  34944 agctttttaaacaatattat 34963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 317 - 430
Target Start/End: Complemental strand, 53896015 - 53895900
Alignment:
Q  317 aaaataaataaagactagatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaatct--cgatcaaataacatattctaact 414  Q
    |||||||||| |||  ||||||||  |||||| |||||||| ||||||||||||||||| |||||||||||||||  ||||||||||||| ||||||  |    
T  53896015 aaaataaatagagaagagatagggctatttcgcttggggtcagagacactcaaccaagcctaacaactgcaatctcacgatcaaataacagattctagat 53895916  T
Q  415 ttttaaacaatattat 430  Q
    |||||||| |||||||    
T  53895915 ttttaaacgatattat 53895900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 225 - 430
Target Start/End: Original strand, 30217820 - 30218027
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaa-taa 323  Q
    ||||| |||||| |||||||||||||||||| |||||||||||||| || || | ||||||||||| |||| |||  | | ||||   || ||||| |||    
T  30217820 cgtatttcataagcattttcacaatatttatcacattaagtgtttgagtataaattgtttgtttgtgtaaaactattttaactattcgacgtaaaagtaa 30217919  T
Q  324 ataaagactagatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaatctc--gatcaaataacatattctaactttttaaa 421  Q
    |   |||| ||||||||  |  ||| |||||||  |||| | |||||||||||||||| ||||||||||  |||||||||||  ||||||||||||||||    
T  30217920 aacgagacgagatagggctagctcgcttggggttagagata-tcaaccaagcgtaacagctgcaatctctcgatcaaataacgaattctaactttttaaa 30218018  T
Q  422 caatattat 430  Q
    | |||||||    
T  30218019 cgatattat 30218027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 317 - 430
Target Start/End: Complemental strand, 6640599 - 6640484
Alignment:
Q  317 aaaataaataaagactagatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaatctc--gatcaaataacatattctaact 414  Q
    |||||||||| |||  ||||| |||||||||| |||||||  |||  | |||||||||||||||||||||||||||  |||||||||||  |||||| ||    
T  6640599 aaaataaatagagatgagataaggtcatttcgcttggggttagagttaatcaaccaagcgtaacaactgcaatctcgtgatcaaataacggattctagct 6640500  T
Q  415 ttttaaacaatattat 430  Q
    |||||||| |||||||    
T  6640499 ttttaaacgatattat 6640484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 345 - 422
Target Start/End: Complemental strand, 20949355 - 20949276
Alignment:
Q  345 ttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaac 422  Q
    |||| |||||||| ||||||||||||||||||||||||||||||  ||||||| |||||||  |||||| ||||||||||    
T  20949355 ttcgcttggggtcagagacactcaaccaagcgtaacaactgcaacctctcgattaaataacggattctagctttttaaac 20949276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 343 - 430
Target Start/End: Original strand, 33110251 - 33110342
Alignment:
Q  343 atttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa----tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||    || ||||||||||    |||||| ||||||||||||||||||    
T  33110251 atttcgcttggggtcagagacactcaaccaagcgtaacaactgcaaaatctcacgatcaaatattggattctagctttttaaacaatattat 33110342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 225 - 422
Target Start/End: Original strand, 26373065 - 26373263
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaa-taa 323  Q
    ||||| |||||| |||||||||||||||| | ||||||||||||||||| || | ||||||||||| |||| || | |   ||||   |||||||| |||    
T  26373065 cgtatttcataagcattttcacaatatttgtcacattaagtgtttgggtataaattgtttgtttgtgtaaaact-attttcctattcgacataaaagtaa 26373163  T
Q  324 ataaagactagatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaatctc--gatcaaataacatattctaactttttaaa 421  Q
    |   |||  ||||||||  |||||| ||| |||| |||||| |||||||||||||||||||||||||||  |||| | ||||  |||||| |||||||||    
T  26373164 aacgagaagagatagggctatttcgcttgcggtcagagaca-tcaaccaagcgtaacaactgcaatctcttgatcgattaacgaattctagctttttaaa 26373262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 225 - 392
Target Start/End: Complemental strand, 55327499 - 55327333
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaa-taa 323  Q
    ||||| |||||| |||||||||||||||||| ||||||||||||||||| || | || |||||||| |||| || | |   ||||   |||||||| |||    
T  55327499 cgtatttcataagcattttcacaatatttatcacattaagtgtttgggtataaattgattgtttgtgtaaaact-attttcctattcgacataaaagtaa 55327401  T
Q  324 ataaagactagatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaatctc 392  Q
    |   |||  ||| ||||  |||||| |||||||| |||||| |||||||||||||||||||||||||||    
T  55327400 aacgagaagagacagggctatttcgcttggggtcagagaca-tcaaccaagcgtaacaactgcaatctc 55327333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 324166 - 324096
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | || |||||||||||||| || | ||||||||||| ||||    
T  324166 cgtatttcataagcattttcacaatatttgtcacgttaagtgtttgggtataaattgtttgtttgtgtaaa 324096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 4838570 - 4838640
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | || |||||||||||||| || | ||||||||||| ||||    
T  4838570 cgtatttcataagcattttcacaatatttgtcacgttaagtgtttgggtataaattgtttgtttgtgtaaa 4838640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 5272997 - 5273067
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | || |||||||||||||| || | ||||||||||| ||||    
T  5272997 cgtatttcataagcattttcacaatatttgtcacgttaagtgtttgggtataaattgtttgtttgtgtaaa 5273067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 22048409 - 22048339
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | || |||||||||||||| || | ||||||||||| ||||    
T  22048409 cgtatttcataagcattttcacaatatttgtcacgttaagtgtttgggtataaattgtttgtttgtgtaaa 22048339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 225 - 290
Target Start/End: Complemental strand, 1188692 - 1188627
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgt 290  Q
    ||||| |||||| |||||||||||||||||| | ||||||||| ||||| || | |||||||||||    
T  1188692 cgtatttcataagcattttcacaatatttatcatattaagtgtgtgggtataaattgtttgtttgt 1188627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 225 - 430
Target Start/End: Original strand, 40994981 - 40995187
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaa-taa 323  Q
    ||||| |||||  ||||||||||||| || | ||||||||||||||||| || | ||||||||||| |||| || | |   |||| | |||||||| |||    
T  40994981 cgtatttcatatgcattttcacaatacttgtcacattaagtgtttgggtataaagtgtttgtttgtgtaaaact-attttcctatttgacataaaagtaa 40995079  T
Q  324 ataaagactagatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaa 421  Q
    |   |||  ||||||||  ||||||  || |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||  |||||| |||||||||    
T  40995080 aacgagaagagatagggctatttcgcatgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacggattctagctttttaaa 40995178  T
Q  422 caatattat 430  Q
     ||||||||    
T  40995179 aaatattat 40995187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 333 - 430
Target Start/End: Complemental strand, 1188584 - 1188486
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||| |||||  ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | || || |||||| |||||||||| |||||||    
T  1188584 agatagggttatttcacttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattagcagattctagctttttaaacgatattat 1188486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 35416130 - 35416178
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggt 273  Q
    ||||| |||||| |||||||||||||||| | |||||||||||||||||    
T  35416130 cgtatttcataagcattttcacaatatttgtcacattaagtgtttgggt 35416178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 366 - 430
Target Start/End: Original strand, 4838710 - 4838776
Alignment:
Q  366 tcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    |||||||||||||||| ||||||  |||||||| | ||||| |||||| |||||||||| |||||||    
T  4838710 tcaaccaagcgtaacagctgcaatctctcgatcgattaacagattctagctttttaaactatattat 4838776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 366 - 430
Target Start/End: Original strand, 19247402 - 19247468
Alignment:
Q  366 tcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    |||||||||| ||||||||||||  |||||||  | ||||| ||||||||||||||||| |||||||    
T  19247402 tcaaccaagcataacaactgcaatctctcgatagattaacagattctaactttttaaacgatattat 19247468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 21668338 - 21668408
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||||| | || |||||||| ||| || | ||||||||||| ||||    
T  21668338 cgtatttcataagcattttcacaatatttatcatataaagtgtttaggtataaagtgtttgtttgtgtaaa 21668408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 21677102 - 21677172
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||||| | || |||||||| ||| || | ||||||||||| ||||    
T  21677102 cgtatttcataagcattttcacaatatttatcatataaagtgtttaggtataaagtgtttgtttgtgtaaa 21677172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 42532320 - 42532390
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| || ||| |||||||||||||||| | ||||||| ||||||||| || | ||||||||||| ||||    
T  42532320 cgtatttcgtaagcattttcacaatatttgtcacattaactgtttgggtataaattgtttgtttgtgtaaa 42532390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 44428825 - 44428895
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | || ||||||||||| || || | ||||||||||| ||||    
T  44428825 cgtatttcataagcattttcacaatatttgtcacgttaagtgtttgagtataaattgtttgtttgtgtaaa 44428895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 343 - 430
Target Start/End: Complemental strand, 52619112 - 52619024
Alignment:
Q  343 atttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    |||||| |||||||| |||||| |||||||||||||||| ||||||  |||||||| | ||||  |||||| |||||||| | |||||||    
T  52619112 atttcgcttggggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacggattctatctttttaatctatattat 52619024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 52619230 - 52619160
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | ||||||||||||||  | || | ||||||||||| ||||    
T  52619230 cgtatttcataagcattttcacaatatttgtcacattaagtgtttgtttataaattgtttgtttgtgtaaa 52619160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 333 - 430
Target Start/End: Complemental strand, 324058 - 323960
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  ||| || ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||  |||||| |||||||||| |||||||    
T  324058 agatagggctattccgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacggattctagctttttaaactatattat 323960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 339 - 430
Target Start/End: Original strand, 29032341 - 29032434
Alignment:
Q  339 ggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaatct--cgatcaaataacatattctaactttttaaacaatattat 430  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||| |||  ||||||||| ||| |||||| |||||||||| |||||||    
T  29032341 ggtcatttcgcttggggtcagagacactcaaccaagcgtaacaactgcattctcacgatcaaattacagattctagctttttaaacgatattat 29032434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 261 - 403
Target Start/End: Complemental strand, 1275281 - 1275137
Alignment:
Q  261 taagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaataaataaagactagatagggtcatttcgtttggggtctga 360  Q
    ||||||| ||| |||| ||||| ||||||| |||| ||| || | |||| | ||||||||| |||  | |  |||||||| ||||||| |||||||| ||    
T  1275281 taagtgtatggatttaaaatgtgtgtttgtgtaaacctatataaactatttgacataaaattaatcgataagagatagggccatttcgcttggggtcaga 1275182  T
Q  361 gacactcaaccaagcgtaacaactgcaatct--cgatcaaataac 403  Q
    |||||||||||||||||||||||||||||||  ||||||||||||    
T  1275181 gacactcaaccaagcgtaacaactgcaatctcacgatcaaataac 1275137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 343 - 430
Target Start/End: Complemental strand, 22909727 - 22909639
Alignment:
Q  343 atttcgtttggggtctgagacactcaaccaagcgtaacaactgcaat--ctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    |||||| |||||||| |||||| ||||||||||||||||||||||||  ||||||||||||||| |||||| |||||||||| |||||||    
T  22909727 atttcgcttggggtcagagaca-tcaaccaagcgtaacaactgcaatttctcgatcaaataacagattctagctttttaaacgatattat 22909639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 225 - 430
Target Start/End: Original strand, 2796997 - 2797203
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaa-taa 323  Q
    ||||| ||| || |||||||||||||||| | ||||||||||||||||| || | ||||||||||| |||| |||  |   |||| | |||||||| |||    
T  2796997 cgtatttcaaaagcattttcacaatatttgtcacattaagtgtttgggtataaattgtttgtttgtgtaaaactattttc-ctatttgacataaaagtaa 2797095  T
Q  324 ataaagactagatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaa 421  Q
    |   |||  ||||||||| |||||| ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||  |||||| |||||||||    
T  2797096 aacgagaagagatagggttatttcgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacgaattctagctttttaaa 2797194  T
Q  422 caatattat 430  Q
    | |||||||    
T  2797195 cgatattat 2797203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 226 - 430
Target Start/End: Complemental strand, 12184586 - 12184381
Alignment:
Q  226 gtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacat-aaaataaa 324  Q
    |||| |||||| |||||||||||||||| | ||||||||||||||||| || | ||||||||||| |||| || | |   ||||   |||| ||||||||    
T  12184586 gtatttcataagcattttcacaatatttgtcacattaagtgtttgggtataaattgtttgtttgtgtaaaact-attttcctattcgacatgaaaataaa 12184488  T
Q  325 taaagactagatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaac 422  Q
       |||  ||||||||  |||||| ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||| |||||| ||||||||||    
T  12184487 acgagaagagatagggctatttcgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacaaattctagctttttaaac 12184389  T
Q  423 aatattat 430  Q
     |||||||    
T  12184388 gatattat 12184381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 225 - 430
Target Start/End: Original strand, 3544312 - 3544518
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaa-taa 323  Q
    ||||| |||||| ||||||||||||||||||  |||||| ||||||||| || | |||||||||| ||||| ||   | ||||||   |||||||| |||    
T  3544312 cgtatttcataagcattttcacaatatttatcgcattaaatgtttgggtataaagtgtttgtttgaataaaact-gtttatctattcgacataaaagtaa 3544410  T
Q  324 ataaagactagatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaa 421  Q
    |   |||  ||||||||  |||||| ||||| || |||| | |||||||||||||||| ||||||  |||||||||||||||  ||| || |||||||||    
T  3544411 aatgagaagagatagggctatttcgcttgggttcagagata-tcaaccaagcgtaacagctgcaatctctcgatcaaataacgaattatagctttttaaa 3544509  T
Q  422 caatattat 430  Q
    | |||||||    
T  3544510 cgatattat 3544518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 225 - 300
Target Start/End: Original strand, 8107322 - 8107397
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaatctaa 300  Q
    ||||| |||||| |||||||||||||||| | ||||||||||||||||| || | ||||||||||| |||| ||||    
T  8107322 cgtatttcataagcattttcacaatatttgtcacattaagtgtttgggtataaattgtttgtttgtgtaaaactaa 8107397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 343 - 430
Target Start/End: Original strand, 4704930 - 4705018
Alignment:
Q  343 atttcgtttggggtctgagacactcaaccaagcgtaacaactgcaatctc--gatcaaataacatattctaactttttaaacaatattat 430  Q
    |||||| ||||||||  ||||| |||||||||||||| | ||||||||||  |||||||||||  ||||||||||||||||| |||||||    
T  4704930 atttcgcttggggtcaaagaca-tcaaccaagcgtaatagctgcaatctctcgatcaaataacggattctaactttttaaacgatattat 4705018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 31879326 - 31879256
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||||| |||||||||||||| || || | ||||||||||| ||||    
T  31879326 cgtatttcataagcattttcacaatatttatcacattaagtgtttgagtataaattgtttgtttgtgtaaa 31879256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 225 - 430
Target Start/End: Complemental strand, 31882838 - 31882632
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaa-taa 323  Q
    ||||| |||||| |||||||||||||||||| | ||||||||||||||| || | ||||||||| | | || |||  |   ||||   |||||||| |||    
T  31882838 cgtatttcataagcattttcacaatatttatcatattaagtgtttgggtataaattgtttgtttatgtgaaactattttc-ctattcgacataaaagtaa 31882740  T
Q  324 ataaagactagatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaa 421  Q
    |   |||  ||||||||  |||||| ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||  ||||||||||||||||    
T  31882739 aacgagaagagatagggctatttcgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacgaattctaactttttaaa 31882641  T
Q  422 caatattat 430  Q
    | |||||||    
T  31882640 cgatattat 31882632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 22321241 - 22321305
Alignment:
Q  231 tcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    |||||| |||||||||||||||| | ||||||||||||||||| || | ||||||||||| ||||    
T  22321241 tcataagcattttcacaatatttgtcacattaagtgtttgggtataaattgtttgtttgtgtaaa 22321305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 366 - 430
Target Start/End: Complemental strand, 2478248 - 2478182
Alignment:
Q  366 tcaaccaagcgtaacaactgcaat--ctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    |||||||||||||||| |||||||  ||||||||||||||  |||||| |||||||||| |||||||    
T  2478248 tcaaccaagcgtaacagctgcaatttctcgatcaaataacggattctagctttttaaacgatattat 2478182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 231 - 430
Target Start/End: Original strand, 12089899 - 12090099
Alignment:
Q  231 tcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaa-taaataaag 329  Q
    |||||| |||||||||||||||| | ||||||||||||||||| || | ||||||||||| | || |||  |   ||||   |||||||| ||||   ||    
T  12089899 tcataagcattttcacaatatttgtcacattaagtgtttgggtataaattgtttgtttgtgtgaaactattttc-ctattcgacataaaagtaaaacgag 12089997  T
Q  330 actagatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatat 427  Q
    |  ||||||||  |||||| ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | || | ||||||| |||||||||| ||||    
T  12089998 aagagatagggctatttcgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattatcgtattctagctttttaaacgatat 12090096  T
Q  428 tat 430  Q
    |||    
T  12090097 tat 12090099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 31663952 - 31664011
Alignment:
Q  231 tcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgt 290  Q
    |||||| |||||||||||||||| | ||||||||||||||||| || | |||||||||||    
T  31663952 tcataagcattttcacaatatttgtcacattaagtgtttgggtataaattgtttgtttgt 31664011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 2632124 - 2632054
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | ||||||||||||||||| || | | ||||||||| ||||    
T  2632124 cgtatttcataagcattttcacaatatttgtcacattaagtgtttgggtataaattatttgtttgtgtaaa 2632054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 10345740 - 10345810
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | || |||||||||||||| || | ||||||||||| ||||    
T  10345740 cgtatttcataagcattttcacaatatttgtcacgttaagtgtttgggtataaattgtttgtttgtgtaaa 10345810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 12191569 - 12191499
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | |||||||||||| |||| || | ||||||||||| ||||    
T  12191569 cgtatttcataagcattttcacaatatttgtcacattaagtgttagggtataaattgtttgtttgtgtaaa 12191499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 23795821 - 23795751
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | || |||||||||||||| || | ||||||||||| ||||    
T  23795821 cgtatttcataagcattttcacaatatttgtcacgttaagtgtttgggtataaattgtttgtttgtgtaaa 23795751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 31157710 - 31157780
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | || |||||||||||||| || | ||||||||||| ||||    
T  31157710 cgtatttcataagcattttcacaatatttgtcacgttaagtgtttgggtataaattgtttgtttgtgtaaa 31157780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 45500145 - 45500215
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| ||||||| |||||||| | ||||||||||||||||| || | ||||||||||| ||||    
T  45500145 cgtatttcataagcattttctcaatatttgtcacattaagtgtttgggtataaattgtttgtttgtgtaaa 45500215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 226 - 295
Target Start/End: Complemental strand, 1954653 - 1954584
Alignment:
Q  226 gtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    |||| |||||| |||||||||||||||| | |||||||||| |||||| || | ||||||||||| ||||    
T  1954653 gtatttcataagcattttcacaatatttgtcacattaagtgcttgggtataaattgtttgtttgtgtaaa 1954584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 333 - 430
Target Start/End: Original strand, 22321343 - 22321441
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  ||| || ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||| |||||| |||||||||| |||||||    
T  22321343 agatagggctattccgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacagattctagctttttaaactatattat 22321441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 288
Target Start/End: Complemental strand, 24483473 - 24483410
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgttt 288  Q
    ||||| |||||| |||||||| ||||||||| |||| |||||||||||| || | |||||||||    
T  24483473 cgtatttcataagcattttcataatatttatcacatcaagtgtttgggtataaattgtttgttt 24483410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 6173243 - 6173173
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | || ||||||||||| || || | ||||||||||| ||||    
T  6173243 cgtatttcataagcattttcacaatatttgtcacgttaagtgtttgagtataaattgtttgtttgtgtaaa 6173173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 343 - 430
Target Start/End: Complemental strand, 24483355 - 24483267
Alignment:
Q  343 atttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    |||||| |||||||| |||| | |||||||||||||||||||||||  |||||||| | ||||  |||||| |||||| ||| |||||||    
T  24483355 atttcgcttggggtcagagata-tcaaccaagcgtaacaactgcaatctctcgatcgattaacgaattctagcttttttaacgatattat 24483267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 295
Target Start/End: Complemental strand, 22825335 - 22825266
Alignment:
Q  226 gtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    |||| |||||| |||||||| ||||||| | || |||||||||||||| || | ||||||||||| ||||    
T  22825335 gtatttcataagcattttcataatatttgtcacgttaagtgtttgggtataaattgtttgtttgtgtaaa 22825266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 333 - 430
Target Start/End: Complemental strand, 1954546 - 1954448
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  |||||| ||| |||| |||||| || ||||||||||||| ||||||  |||||||| | ||||  |||||| |||||||||| |||||||    
T  1954546 agatagggatatttcgcttgcggtcagagaca-tctaccaagcgtaacagctgcaatctctcgatcgattaacggattctagctttttaaacgatattat 1954448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 333 - 430
Target Start/End: Complemental strand, 2632016 - 2631918
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  ||| || ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||  |||||| |||||||||| |||||||    
T  2632016 agatagggctattccgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacggattctagctttttaaactatattat 2631918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 239 - 295
Target Start/End: Original strand, 4704826 - 4704882
Alignment:
Q  239 attttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||||||| ||||||| |||||||||| |||||| || | ||||||||||| ||||    
T  4704826 attttcacagtatttatcacattaagtgcttgggtataaattgtttgtttgtgtaaa 4704882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 333 - 430
Target Start/End: Original strand, 8107430 - 8107528
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  ||| || ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||  |||||| |||||||||| |||||||    
T  8107430 agatagggctattccgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacggattctagctttttaaactatattat 8107528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 333 - 430
Target Start/End: Original strand, 10345847 - 10345945
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  ||| || ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||  |||||| |||||||||| |||||||    
T  10345847 agatagggctattccgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacggattctagctttttaaactatattat 10345945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 333 - 430
Target Start/End: Complemental strand, 23795714 - 23795616
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  ||| || ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||  |||||| |||||||||| |||||||    
T  23795714 agatagggctattccgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacggattctagctttttaaactatattat 23795616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 333 - 430
Target Start/End: Original strand, 31157818 - 31157916
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  ||| || ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||  |||||| |||||||||| |||||||    
T  31157818 agatagggctattccgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacggattctagctttttaaactatattat 31157916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 225 - 422
Target Start/End: Original strand, 15902 - 16105
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaataaa 324  Q
    ||||| || |||||||||  |||  |||||| | |||||||||||||||||| ||| | ||||||| |||| ||| |  | |||| | ||||||||||||    
T  15902 cgtatatcttaaacatttcaacatcatttatcatattaagtgtttgggtttaaaatttatgtttgtgtaaacctata--aactatttgacataaaataaa 15999  T
Q  325 ------taaagactagatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaacttt 416  Q
          ||||||  ||||||||  |||||| |||||||| ||||||||||||||||||||||| ||||||  |||||||||||||||  |||||| ||||    
T  16000 ataaaataaagaagagatagggctatttcgcttggggtcagagacactcaaccaagcgtaacagctgcaatctctcgatcaaataacggattctaccttt 16099  T
Q  417 ttaaac 422  Q
    ||||||    
T  16100 ttaaac 16105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 299
Target Start/End: Original strand, 14682 - 14731
Alignment:
Q  250 atttatgacattaagtgtttgggtttacaatgtttgtttgtataaatcta 299  Q
    |||||| | |||||||||||||||||| ||| ||||||||| ||||||||    
T  14682 atttatcatattaagtgtttgggtttaaaatatttgtttgtctaaatcta 14731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 231 - 430
Target Start/End: Original strand, 116008 - 116208
Alignment:
Q  231 tcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaa-taaataaag 329  Q
    |||||| |||||||||||||||| | ||||||||||||||||| || | ||||||||||| |||| |||  |   ||||   |||||||| ||||    |    
T  116008 tcataagcattttcacaatatttgtcacattaagtgtttgggtataaattgtttgtttgtgtaaaactattttc-ctattcgacataaaagtaaaacttg 116106  T
Q  330 actagatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaatctc--gatcaaataacatattctaactttttaaacaatat 427  Q
    |  ||||||||  |||||| ||| |||| |||||| |||||||||||||||||||||||||||  |||||| ||||  ||||||||||||||||||||||    
T  116107 aagagatagggctatttcgcttgcggtcagagaca-tcaaccaagcgtaacaactgcaatctctcgatcaattaacggattctaactttttaaacaatat 116205  T
Q  428 tat 430  Q
    |||    
T  116206 tat 116208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 168842 - 168912
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | || |||||||||||||| || | ||||||||||| ||||    
T  168842 cgtatttcataagcattttcacaatatttgtcacgttaagtgtttgggtataaattgtttgtttgtgtaaa 168912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0458 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0458
Description:

Target: scaffold0458; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 317 - 411
Target Start/End: Original strand, 6809 - 6905
Alignment:
Q  317 aaaataaataaagactagatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaatctc--gatcaaataacatattcta 411  Q
    |||||||||| ||||  ||||||||||||||  |||||||  |||  | |||||||||||||||||||||||||||  |||||||||||||||||||    
T  6809 aaaataaatagagacgggatagggtcatttcacttggggttagagttaatcaaccaagcgtaacaactgcaatctcatgatcaaataacatattcta 6905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 261 - 430
Target Start/End: Complemental strand, 7447 - 7278
Alignment:
Q  261 taagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaataaataaagactagatagggtcatttcgtttggggtctga 360  Q
    ||||||| ||| |||| ||||| ||||||| |||| ||| || | |||| | |||||||||||||| |||  ||||| |  ||||||| |||||||  ||    
T  7447 taagtgtatggatttaaaatgtctgtttgtgtaaa-ctatataaactatttgacataaaataaatagagaagagatatgaccatttcgcttggggttaga 7349  T
Q  361 gacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    || | |||| ||||||||||| ||||||  |||||||||| ||||| |||||| |||||||||| |||||||    
T  7348 gata-tcaatcaagcgtaacagctgcaatctctcgatcaattaacagattctagctttttaaacgatattat 7278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 261 - 430
Target Start/End: Complemental strand, 7457 - 7288
Alignment:
Q  261 taagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaataaataaagactagatagggtcatttcgtttggggtctga 360  Q
    ||||||| ||| |||| ||||| ||||||| |||| ||| || | |||| | |||||||||||||| |||  ||||| |  ||||||| |||||||  ||    
T  7457 taagtgtatggatttaaaatgtctgtttgtgtaaa-ctatataaactatttgacataaaataaatagagaagagatatgaccatttcgcttggggttaga 7359  T
Q  361 gacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    || | |||| ||||||||||| ||||||  |||||||||| ||||| |||||| |||||||||| |||||||    
T  7358 gata-tcaatcaagcgtaacagctgcaatctctcgatcaattaacagattctagctttttaaacgatattat 7288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 317 - 429
Target Start/End: Complemental strand, 6152 - 6038
Alignment:
Q  317 aaaataaataaagactagatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaatct--cgatcaaataacatattctaact 414  Q
    |||||||||  |||| |||||||| ||||||| |||||||  |||| | |||||||||||||||||||  |||||  ||||||||||||  |||||| ||    
T  6152 aaaataaatcgagacgagatagggccatttcgcttggggttagagataatcaaccaagcgtaacaactataatctcacgatcaaataacgaattctagct 6053  T
Q  415 ttttaaacaatatta 429  Q
     ||||||| ||||||    
T  6052 ctttaaacgatatta 6038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0336 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0336
Description:

Target: scaffold0336; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 225 - 430
Target Start/End: Complemental strand, 9470 - 9264
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaa-taa 323  Q
    ||||| |||||| |||||||||||||||| | || |||||||||||||| || | ||||||||||| |||| |||  |   |||    |||||||| |||    
T  9470 cgtatttcataagcattttcacaatatttgtcacgttaagtgtttgggtataaattgtttgtttgtgtaaaactattttc-ctaatagacataaaagtaa 9372  T
Q  324 ataaagactagatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaa 421  Q
    |   |||  ||||||||  ||| || ||| |||| |||||| |||||||||||||||||||||||  |||||||||| ||||  |||||| |||||||||    
T  9371 aacgagaagagatagggctattccgcttgcggtcagagaca-tcaaccaagcgtaacaactgcaatctctcgatcaattaacggattctagctttttaaa 9273  T
Q  422 caatattat 430  Q
    | |||||||    
T  9272 ctatattat 9264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 261 - 430
Target Start/End: Complemental strand, 25068 - 24899
Alignment:
Q  261 taagtgtttgggtttacaatgtttgtttgtataaatctaaatgatctatgtcacataaaataaataaagactagatagggtcatttcgtttggggtctga 360  Q
    ||||||| ||| |||| ||||| ||||||| |||| ||| || | |||| | |||||||||||||| |||  ||||| |  ||||||| |||||||  ||    
T  25068 taagtgtatggatttaaaatgtctgtttgtgtaaa-ctatataaactatttgacataaaataaatagagaagagatatgaccatttcgcttggggttaga 24970  T
Q  361 gacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    || | |||| ||||||||||| ||||||  |||||||||| |||||  ||||| |||||||||| |||||||    
T  24969 gata-tcaatcaagcgtaacagctgcaatctctcgatcaattaacagtttctagctttttaaacgatattat 24899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 75892 - 75956
Alignment:
Q  231 tcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    |||||| |||||||||||||||||| || |||||||||||||| || | ||||||||||| ||||    
T  75892 tcataagcattttcacaatatttatcacgttaagtgtttgggtataaattgtttgtttgtgtaaa 75956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 12922 - 12852
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | ||||||| ||||||||| || | ||||||||||| ||||    
T  12922 cgtatttcataagcattttcacaatatttgtcacattaattgtttgggtataaattgtttgtttgtgtaaa 12852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 333 - 430
Target Start/End: Complemental strand, 12814 - 12716
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  ||| || ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||  |||||| |||||||||| |||||||    
T  12814 agatagggctattccgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacgaattctagctttttaaactatattat 12716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 175329 - 175259
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | || |||||||||||||| || | ||||||||||| ||||    
T  175329 cgtatttcataagcattttcacaatatttgtcacgttaagtgtttgggtataaattgtttgtttgtgtaaa 175259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 350040 - 350110
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | || |||||||||||||| || | ||||||||||| ||||    
T  350040 cgtatttcataagcattttcacaatatttgtcacgttaagtgtttgggtataaattgtttgtttgtgtaaa 350110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 317 - 430
Target Start/End: Complemental strand, 14820 - 14706
Alignment:
Q  317 aaaataaataaagactagatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaact 414  Q
    |||||||||| |||  |||||||  ||||||| ||| |||  |||| | |||||||||||||||| ||||||  |||||||||| ||||  |||||| ||    
T  14820 aaaataaatagagaagagataggaccatttcgcttgaggttagagata-tcaaccaagcgtaacagctgcaatctctcgatcaattaacggattctagct 14722  T
Q  415 ttttaaacaatattat 430  Q
    |||||||| |||||||    
T  14721 ttttaaacgatattat 14706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 333 - 430
Target Start/End: Original strand, 25192 - 25290
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  |||||| ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||  |||||| |||||||||| |||||||    
T  25192 agatagggctatttcgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacgaattctagctttttaaactatattat 25290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0298 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: scaffold0298
Description:

Target: scaffold0298; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 288
Target Start/End: Original strand, 11638 - 11701
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgttt 288  Q
    ||||| |||||| |||||||||||||||| | ||||||| ||||||||| || | |||||||||    
T  11638 cgtatttcataagcattttcacaatatttgtcacattaattgtttgggtataaattgtttgttt 11701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0298; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 288
Target Start/End: Original strand, 15408 - 15471
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgttt 288  Q
    ||||| |||||| |||||||||||||||| | ||||||| ||||||||| || | |||||||||    
T  15408 cgtatttcataagcattttcacaatatttgtcacattaattgtttgggtataaattgtttgttt 15471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0298; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 333 - 430
Target Start/End: Original strand, 11746 - 11844
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  ||| || ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||  |||||| |||||||||| |||||||    
T  11746 agatagggctattccgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacggattctagctttttaaactatattat 11844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0298; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 333 - 430
Target Start/End: Original strand, 15516 - 15614
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  ||| || ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||  |||||| |||||||||| |||||||    
T  15516 agatagggctattccgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacggattctagctttttaaactatattat 15614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0444 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 11922 - 11992
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | || ||||||||||| || || | ||||||||||| ||||    
T  11922 cgtatttcataagcattttcacaatatttgtcacgttaagtgtttgagtataaattgtttgtttgtgtaaa 11992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0444; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 333 - 430
Target Start/End: Original strand, 12030 - 12128
Alignment:
Q  333 agatagggtcatttcgtttggggtctgagacactcaaccaagcgtaacaactgcaa--tctcgatcaaataacatattctaactttttaaacaatattat 430  Q
    ||||||||  ||| || ||| |||| |||||| |||||||||||||||| ||||||  |||||||| | ||||  |||||| |||||||||| |||||||    
T  12030 agatagggctattccgcttgcggtcagagaca-tcaaccaagcgtaacagctgcaatctctcgatcgattaacgaattctagctttttaaactatattat 12128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 28333 - 28403
Alignment:
Q  225 cgtatctcataaacattttcacaatatttatgacattaagtgtttgggtttacaatgtttgtttgtataaa 295  Q
    ||||| |||||| |||||||||||||||| | || ||||||||||| || || | ||||||||||| ||||    
T  28333 cgtatttcataagcattttcacaatatttgtcacgttaagtgtttgagtataaattgtttgtttgtgtaaa 28403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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