View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4295_low_10 (Length: 368)
Name: NF4295_low_10
Description: NF4295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4295_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 145 - 351
Target Start/End: Complemental strand, 43500408 - 43500201
Alignment:
| Q |
145 |
ataagctaaactattaactcaaccaccgcttgaagtaggttatcaaaaaacactagaaacaggtnnnnnnnngttttaaacttgtgagtaaaa-ttgtta |
243 |
Q |
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| T |
43500408 |
ataagctaaactattaactcaaccaccgcttgaagtaggttatcaaaaaacactagaaataggtaaaaaaaagttttaaacttgtgagaaaaaattgtta |
43500309 |
T |
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| Q |
244 |
tcaataatgtttattttgatcgtatagactaataagctattcaccataaactcaaaaatataaaattattatagatgtattgttgagagatctctatctg |
343 |
Q |
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| T |
43500308 |
tcaataatgtttattttgatcgtatagactaataagctattcaccgtaaactcaaaaatataaaattattatagatgtattgttgagagatctctatctg |
43500209 |
T |
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| Q |
344 |
tcgagtct |
351 |
Q |
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|||||||| |
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| T |
43500208 |
tcgagtct |
43500201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 43500552 - 43500522
Alignment:
| Q |
1 |
cggataaactaatgattgaatttatagtgtt |
31 |
Q |
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| T |
43500552 |
cggataaactaatgattgaatttatagtgtt |
43500522 |
T |
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