View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4295_low_12 (Length: 323)

Name: NF4295_low_12
Description: NF4295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4295_low_12
NF4295_low_12
[»] chr3 (1 HSPs)
chr3 (18-314)||(38903313-38903609)


Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 38903313 - 38903609
Alignment:
Q  18 gtatatacgattattagtttattacgagctttacttgtaggttagtttatagcataaaatttgaattatttatggagggccgtttgggcatctttcattt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38903313 gtatatacgattattagtttattacgagctttacttgtaggttagtttatagcataaaatttgaattatttatggagggccgtttgggcatctttcattt 38903412  T
Q  118 agttttatatgtgttggttctggatgtgtttacactttaatgccaaagtcatataagtttatttacgttgatattctattggcacgattcaggtgcaaca 217  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38903413 agttttatatgtgttggttctggatgtgtttacacttcaatgccaaagtgatataagtttatttacgttgatattctattggcacgattcaggtgcaaca 38903512  T
Q  218 gcgtcataaatatgctcgcttacttggttattcgtgctatgctgagtatgctgttgatgttagaatggcaaaaacaccgacaaaggtttgtaatttt 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38903513 gcgtcataaatatgctcgcttacttggttattcgtgctatgctgagtatgctgttgatgttagaatggcaaaaacaccgacaaaggtttgtaatttt 38903609  T

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