View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4295_low_13 (Length: 305)
Name: NF4295_low_13
Description: NF4295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4295_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 4 - 300
Target Start/End: Complemental strand, 10651373 - 10651077
Alignment:
| Q |
4 |
agaaaagtgaaggtaaatactgaagtaagataaaacataaaatgaaagtaaatttattaaaagatgaaaataatatagtttattcctaagtttgaagtat |
103 |
Q |
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| T |
10651373 |
agaaaagtgaaggtaaatactgaagtaagataaaacacaaaatgaaagtaaatttattaaaagatgaaaataatatagtttattcctaagtttgaagtat |
10651274 |
T |
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| Q |
104 |
gcaattgtttttcttaaatataagttagaatgtttagaagatagtaatgcaattatagagcaagataagagaaaaatataaacctttcatgtaagcaaca |
203 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10651273 |
gcaactgtttttcttaaatataacttagaatgtttagaagatagtaatgcaattatagagcaagataagagaaaaatataaacctttcatgtaagcaaca |
10651174 |
T |
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| Q |
204 |
gaattcctaactcttctttcacatccatcacagtccattttcaccttaatttcaaccgtctgcaagagaaatatacaaataatatcaaaatcatgtt |
300 |
Q |
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| T |
10651173 |
gaattcctaactcttctttcacatccatcacagtccattttcaccttgatttcaaccgtctgcaagagaaatatacaaataatatcaaaatcatgtt |
10651077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 200 - 274
Target Start/End: Original strand, 10195943 - 10196017
Alignment:
| Q |
200 |
aacagaattcctaactcttctttcacatccatcacagtccattttcaccttaatttcaaccgtctgcaagagaaa |
274 |
Q |
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||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||| |||| |||||||| |
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| T |
10195943 |
aacagaattccgaactcttctttcacagccatcacagtccattttcacctttatttcaactgtctataagagaaa |
10196017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 54328 - 54276
Alignment:
| Q |
213 |
actcttctttcacatccatcacagtccattttcaccttaatttcaaccgtctg |
265 |
Q |
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|||||||||||||| ||||||||||||||| |||| || || ||||||||||| |
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| T |
54328 |
actcttctttcacaaccatcacagtccattctcacttttatctcaaccgtctg |
54276 |
T |
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