View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4295_low_18 (Length: 247)

Name: NF4295_low_18
Description: NF4295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4295_low_18
NF4295_low_18
[»] chr3 (2 HSPs)
chr3 (160-247)||(39452971-39453058)
chr3 (161-235)||(52585537-52585613)
[»] chr7 (2 HSPs)
chr7 (161-235)||(15026486-15026562)
chr7 (161-228)||(48859580-48859649)
[»] chr8 (1 HSPs)
chr8 (161-224)||(10260571-10260635)
[»] chr5 (1 HSPs)
chr5 (161-235)||(17237349-17237425)
[»] chr1 (1 HSPs)
chr1 (167-222)||(42132181-42132237)


Alignment Details
Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 160 - 247
Target Start/End: Original strand, 39452971 - 39453058
Alignment:
Q  160 taagaaacttatatcatttaattatttaaaaggtgtccaatacaatcgtatttttaccaaaatctgaaagctagcttgggatatagcc 247  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  39452971 taagaaacttatatcattttattatttaaaatgtgtccaatacaatcgtatttttaccaaaatctgaaagttagcttaggatatagcc 39453058  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 52585537 - 52585613
Alignment:
Q  161 aagaaacttatatcatttaattatttaaaaggtgtccaatacaatc--gtatttttaccaaaatctgaaagctagct 235  Q
    ||||| |||||||||||| |||| |||||| |||| ||||||||||   ||||| |||||||||||| || ||||||    
T  52585537 aagaagcttatatcatttcattacttaaaatgtgttcaatacaatccgatatttctaccaaaatctggaaactagct 52585613  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 15026562 - 15026486
Alignment:
Q  161 aagaaacttatatcatttaattatttaaaaggtgtccaatacaatc--gtatttttaccaaaatctgaaagctagct 235  Q
    |||||||||||||||||| |||| |||||| |||| ||||||||||  |||||| |||||||||||| || ||||||    
T  15026562 aagaaacttatatcatttcattacttaaaatgtgttcaatacaatctggtatttctaccaaaatctggaaactagct 15026486  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 48859649 - 48859580
Alignment:
Q  161 aagaaacttatatcatttaattatttaaaaggtgtccaatacaatc--gtatttttaccaaaatctgaaa 228  Q
    ||||||||| |||||||| |||| |||||| |||| ||||||||||  |||||| |||||||||||||||    
T  48859649 aagaaacttgtatcattttattacttaaaatgtgttcaatacaatcgggtatttctaccaaaatctgaaa 48859580  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 224
Target Start/End: Complemental strand, 10260635 - 10260571
Alignment:
Q  161 aagaaacttatatcatttaattatttaaaaggtgtccaatacaatc--gtatttttaccaaaatct 224  Q
    |||||||||||||||||| |||| |||||| |||| ||||||||||  ||||||||||||||||||    
T  10260635 aagaaacttatatcatttcattacttaaaa-gtgttcaatacaatctggtatttttaccaaaatct 10260571  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 17237349 - 17237425
Alignment:
Q  161 aagaaacttatatcatttaattatttaaaaggtgtccaatacaatc--gtatttttaccaaaatctgaaagctagct 235  Q
    ||||| |||||||||||| |||| |||||| |||| ||||| ||||  |||||| |||||||||||| || ||||||    
T  17237349 aagaagcttatatcatttcattacttaaaatgtgttcaatataatctggtatttataccaaaatctggaaactagct 17237425  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 42132237 - 42132181
Alignment:
Q  167 cttatatcatttaattatttaaaaggtgtccaatacaat-cgtatttttaccaaaat 222  Q
    |||||||||||| ||||||||||| |||| |||||||||  || |||||||||||||    
T  42132237 cttatatcatttcattatttaaaatgtgttcaatacaatatgtttttttaccaaaat 42132181  T

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