View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4295_low_5 (Length: 456)
Name: NF4295_low_5
Description: NF4295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4295_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 27 - 431
Target Start/End: Original strand, 42155801 - 42156199
Alignment:
| Q |
27 |
tgatagtgtgatgattaaaaatgaatgtatgaatgaacactttttacagtgatcttgtagcaactaatataacaaactaacaactaatattttaggaaag |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42155801 |
tgatagtgtgatgattaaaaatgaatgtatgaatgaacactttttacagtgatcttgtagcaactaatataacaaactaacaactaatattttaggaaag |
42155900 |
T |
|
| Q |
127 |
ttacttcaaacttcttgttttgtaccattgatataaagtaccattttggttttggggtctaccagtaggtgaaaatccaaggaggttggaaacatagaaa |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42155901 |
ttacttcaaacttcttgttttgtaccattgata--aagtaccattttggttttggggtctaccagtaggtgaaaatccaaggaggttggaaacatagaaa |
42155998 |
T |
|
| Q |
227 |
acaaaggttggactctgtgatgaagatattatcttggtggaaagaaaggcaccttttgataggaggaaaggtggtgctcataaatttggtccgtagtact |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42155999 |
acaaaggttggactctgtgatgaagatattatcttggtggaaagaaaggcaccttttgataggaggaaaggtggtgctcataaatttggtccgtagtact |
42156098 |
T |
|
| Q |
327 |
tactggcaacattccattaattgttctatttttgtttctttaaagcttcttggaatgtcttaaacgaaattgtctgaattcaattaattgggtaagttgg |
426 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42156099 |
tactggcaacattcc----attgttctatttttctttctttaaagcttcttggaatgtcttaaacgaaattttctgaattcaattaattgggtaagttgg |
42156194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 35 - 185
Target Start/End: Original strand, 42165932 - 42166080
Alignment:
| Q |
35 |
tgatgattaaaaatgaatgtatgaatgaacactttttacagtgatcttgtagcaactaatataacaaactaacaactaatattttaggaaagttacttca |
134 |
Q |
| |
|
||||||||| ||||||||| ||| |||| |||||||||| |||||| || || ||||||||||||||| || || ||| ||| | ||||| | ||||| |
|
|
| T |
42165932 |
tgatgattagaaatgaatgaatgtatgatcactttttacggtgatcatgaagtaactaatataacaaaatacaaattaacgtttcatgaaagcttcttca |
42166031 |
T |
|
| Q |
135 |
aacttcttgttttgtaccattgatataaagtaccattttggttttggggtc |
185 |
Q |
| |
|
|||||||||||||| |||| || |||||||||| |||||||||| ||||| |
|
|
| T |
42166032 |
aacttcttgttttgcaccactg--ataaagtaccgttttggtttttgggtc |
42166080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University