View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4295_low_9 (Length: 374)
Name: NF4295_low_9
Description: NF4295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4295_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 10698052 - 10698408
Alignment:
| Q |
1 |
agatttttcaggttttcaaatatacacctaaaaattatagtagaaaatgtcattcaaaaacatgtttaattgtgtaatgtagttgattaataagttgtga |
100 |
Q |
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| T |
10698052 |
agatttttcaggttttcaaatatacacctaaaaattatag---aaaatgtcattcaaaaacatgtttaattgtgtaatgtagttgattaataagttgtga |
10698148 |
T |
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| Q |
101 |
gagtttgacatattcattaaccatctaccaaacgtaattaatcatgtatttaaacaatgttaataatctaaaccgtcgtcaaaatttaacgctaaattcg |
200 |
Q |
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| T |
10698149 |
gagtttgacatattcattaaccatctatcggacgtaattgattatgtatttaaacaatgttaataatctaaaccgtcgtcaaaatttaacgttaaatttg |
10698248 |
T |
|
| Q |
201 |
agtgtcaaaataccaattctctaaaataaagatatactctatggtttactttcattttaaactacaatttcaataacttaccatcaacataaccaaaaag |
300 |
Q |
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| T |
10698249 |
agtgtcaaaataccaattttctaaaataaagatatactctatggtttactttcattttaaactacaatttcaataacttaccatcaacataaccaaaaag |
10698348 |
T |
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| Q |
301 |
ctcattactagggaaagaatatggcaaatgctaacctattgaaactcaaagtgtccttaa |
360 |
Q |
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| T |
10698349 |
ctcattactagggaaagaatatggcaaatgctaacctattgaaacttaaagtgcccttaa |
10698408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 51443559 - 51443515
Alignment:
| Q |
110 |
atattcattaaccatctaccaaacgtaattaatcatgtatttaaa |
154 |
Q |
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| T |
51443559 |
atattcattaaccatctaccaaatgcaattaatcacgtatttaaa |
51443515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 144
Target Start/End: Original strand, 354403 - 354437
Alignment:
| Q |
110 |
atattcattaaccatctaccaaacgtaattaatca |
144 |
Q |
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| T |
354403 |
atattcattaaccatctaccaaatgtaattaatca |
354437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 28820922 - 28820866
Alignment:
| Q |
87 |
ttaataagttgtgagagtttgacatattcattaaccatctaccaaacgtaattaatc |
143 |
Q |
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| T |
28820922 |
ttaatgagttgtgatattttgttatattcattaatcatttaccaaacgtaattaatc |
28820866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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