View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4296-Insertion-3 (Length: 76)
Name: NF4296-Insertion-3
Description: NF4296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4296-Insertion-3 |
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| [»] scaffold0445 (1 HSPs) |
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Alignment Details
Target: scaffold0445 (Bit Score: 52; Significance: 2e-21; HSPs: 1)
Name: scaffold0445
Description:
Target: scaffold0445; HSP #1
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 86 - 16
Alignment:
| Q |
1 |
tttgatgaatatcacattttagataagtttgatttgatgaatattttaaacataatttcatgttattatgagaaaa |
76 |
Q |
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| T |
86 |
tttgatgaatatcacattttagataagtttgat-----gaatattttaaacataatttcatgtcattatgagaaaa |
16 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 6835790 - 6835830
Alignment:
| Q |
33 |
tttgatgaatattttaaacataatttcatgttattatgaga |
73 |
Q |
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| T |
6835790 |
tttgatgaatatttaaaacataatttcatgccattatgaga |
6835830 |
T |
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