View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4296_high_11 (Length: 266)

Name: NF4296_high_11
Description: NF4296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4296_high_11
NF4296_high_11
[»] chr2 (4 HSPs)
chr2 (15-251)||(44226349-44226585)
chr2 (15-251)||(44237147-44237383)
chr2 (23-250)||(44214180-44214406)
chr2 (142-240)||(43462954-43463052)
[»] chr4 (3 HSPs)
chr4 (83-245)||(2901717-2901879)
chr4 (85-244)||(2883150-2883309)
chr4 (91-240)||(2872954-2873103)
[»] chr7 (9 HSPs)
chr7 (91-247)||(39359673-39359829)
chr7 (113-245)||(39551713-39551845)
chr7 (82-228)||(39578117-39578263)
chr7 (117-245)||(39568560-39568688)
chr7 (91-244)||(39625169-39625321)
chr7 (164-244)||(39542498-39542578)
chr7 (91-228)||(39345128-39345265)
chr7 (121-227)||(39592590-39592696)
chr7 (91-228)||(39333849-39333986)
[»] chr8 (1 HSPs)
chr8 (97-228)||(4496102-4496233)
[»] chr1 (2 HSPs)
chr1 (118-228)||(2152544-2152654)
chr1 (118-228)||(2164800-2164910)


Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 15 - 251
Target Start/End: Complemental strand, 44226585 - 44226349
Alignment:
Q  15 caaaggtggtaaactttatatctaaaattatctaacttggatgccgaatgcttaatttgtacagctaactgggagtgtgacttacaatggccatggactg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44226585 caaaggtggtaaactttatatctaaaattatctaacttggatgccgaatgcttaatttgtacagctaactgggagtgtgacttacaatggccatggactg 44226486  T
Q  115 aatgagtttgtacctcaaagaactgctgcctatataagccaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaagat 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  44226485 aatgagtttgtacctcaaagaactgctgcctatataagccaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaaggt 44226386  T
Q  215 gccaaggagttggatcacgttatggttagtctatttt 251  Q
    |||||||||||||||||||||||||||||||||||||    
T  44226385 gccaaggagttggatcacgttatggttagtctatttt 44226349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 15 - 251
Target Start/End: Complemental strand, 44237383 - 44237147
Alignment:
Q  15 caaaggtggtaaactttatatctaaaattatctaacttggatgccgaatgcttaatttgtacagctaactgggagtgtgacttacaatggccatggactg 114  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  44237383 caaaggtggtaaactttatatctaaaattatttaatttggatgccgaattcttaattcgtacagctaactgggagtgtgacttacaatggccatggactg 44237284  T
Q  115 aatgagtttgtacctcaaagaactgctgcctatataagccaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaagat 214  Q
    || ||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  44237283 aacgagtttgtacctcaaagaactgcggcttatatcagccaacatgatgttcatattggagaaatgactgtgagagaaaccttggctttctcagcaagat 44237184  T
Q  215 gccaaggagttggatcacgttatggttagtctatttt 251  Q
    |||||||||||||||||||||||||||||||||||||    
T  44237183 gccaaggagttggatcacgttatggttagtctatttt 44237147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 23 - 250
Target Start/End: Complemental strand, 44214406 - 44214180
Alignment:
Q  23 gtaaactttatatctaaaattatctaacttggatgccgaatgcttaatttgtacagctaactgggagtgtgacttacaatggccatggactgaatgagtt 122  Q
    |||||||| |||| ||||||||  ||| || ||| || |||| ||||||| || ||||| |||||| |||||| |||||||| || ||||||||||||||    
T  44214406 gtaaacttaatatttaaaattacataattttgatacc-aatgtttaatttatatagctatctgggaatgtgacctacaatggacacggactgaatgagtt 44214308  T
Q  123 tgtacctcaaagaactgctgcctatataagccaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaagatgccaagga 222  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  44214307 tgtacctcaaagaactgctgcttatatcagccagcatgatgttcacattggagaaatgactgtgagggaaaccttagctttctcagcaaggtgccaagga 44214208  T
Q  223 gttggatcacgttatggttagtctattt 250  Q
    |||||||| ||||| ||| |||| ||||    
T  44214207 gttggatctcgttacggtgagtcaattt 44214180  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 240
Target Start/End: Complemental strand, 43463052 - 43462954
Alignment:
Q  142 gcctatataagccaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaagatgccaaggagttggatcacgttatggt 240  Q
    |||||||| |||||| ||||||| ||| | || ||||||||||| |  |||||| ||| ||||||||| |||||||||||||||||| |||| ||||||    
T  43463052 gcctatattagccaaaatgatgtacatttgggtgaaatgactgtaaaagaaaccatggatttctcagctagatgccaaggagttggaacacgatatggt 43462954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 83 - 245
Target Start/End: Complemental strand, 2901879 - 2901717
Alignment:
Q  83 ctgggagtgtgacttacaatggccatggactgaatgagtttgtacctcaaagaactgctgcctatataagccaacatgatgttcatattggagaaatgac 182  Q
    ||||||| |||||||| ||||| |||||  || |||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||    
T  2901879 ctgggagagtgacttataatggacatgggatggatgaatttgtacctcaaagaactgctgcatatattagtcaacatgatgttcatattggagaaatgac 2901780  T
Q  183 tgtgagggaaaccttggctttctcagcaagatgccaaggagttggatcacgttatggttagtc 245  Q
    ||| |||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  2901779 tgttagggaaacattggctttctcagcaaggtgccaaggcgttggatcacgttatggttagtc 2901717  T

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Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 85 - 244
Target Start/End: Original strand, 2883150 - 2883309
Alignment:
Q  85 gggagtgtgacttacaatggccatggactgaatgagtttgtacctcaaagaactgctgcctatataagccaacatgatgttcatattggagaaatgactg 184  Q
    ||||| || ||||| ||||| |||||  || |||| ||||||||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||||    
T  2883150 gggagagtaacttataatggacatgggatggatgaatttgtacctcagagaactgctgcatatattagtcaacatgatgttcatattggagaaatgactg 2883249  T
Q  185 tgagggaaaccttggctttctcagcaagatgccaaggagttggatcacgttatggttagt 244  Q
    |||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||    
T  2883250 tgagggaaaccttggctttctcagcaaggtgccaaggtgtcggatcacgttatggttagt 2883309  T

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Target: chr4; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 91 - 240
Target Start/End: Original strand, 2872954 - 2873103
Alignment:
Q  91 gtgacttacaatggccatggactgaatgagtttgtacctcaaagaactgctgcctatataagccaacatgatgttcatattggagaaatgactgtgaggg 190  Q
    |||||||| |||||  ||||| || |||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||    
T  2872954 gtgacttataatggatatggaatggatgaatttgtacctcaaagaactgctgcatatattagtcaacatgatgttcatattggagaaatgactgttaggg 2873053  T
Q  191 aaaccttggctttctcagcaagatgccaaggagttggatcacgttatggt 240  Q
    |||| ||||||||||||||||| |||||||||||||||||| | ||||||    
T  2873054 aaacattggctttctcagcaaggtgccaaggagttggatcaagatatggt 2873103  T

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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 91 - 247
Target Start/End: Original strand, 39359673 - 39359829
Alignment:
Q  91 gtgacttacaatggccatggactgaatgagtttgtacctcaaagaactgctgcctatataagccaacatgatgttcatattggagaaatgactgtgaggg 190  Q
    |||||||| ||||| ||||   ||| |||||||||||| |||||||||||||| ||| |    ||| ||||| |||| ||||||||||||||||| || |    
T  39359673 gtgacttataatggtcatgagatgagtgagtttgtaccccaaagaactgctgcttatgtggatcaaaatgatcttcacattggagaaatgactgttagag 39359772  T
Q  191 aaaccttggctttctcagcaagatgccaaggagttggatcacgttatggttagtcta 247  Q
    |||||||||| |||||||| |||  ||||||||||||| | ||||||||||||||||    
T  39359773 aaaccttggccttctcagctagagtccaaggagttggacctcgttatggttagtcta 39359829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 113 - 245
Target Start/End: Complemental strand, 39551845 - 39551713
Alignment:
Q  113 tgaatgagtttgtacctcaaagaactgctgcctatataagccaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaag 212  Q
    ||||||||||||| ||||||||||||||||| ||| |    ||| ||||| |||| ||||||||||||||||| || |||||||||||||||||||||||    
T  39551845 tgaatgagtttgtgcctcaaagaactgctgcttatgtggatcaaaatgatcttcacattggagaaatgactgttagagaaaccttggctttctcagcaag 39551746  T
Q  213 atgccaaggagttggatcacgttatggttagtc 245  Q
       ||||||||||||  | ||||||||||||||    
T  39551745 ggtccaaggagttgggcctcgttatggttagtc 39551713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 82 - 228
Target Start/End: Complemental strand, 39578263 - 39578117
Alignment:
Q  82 actgggagtgtgacttacaatggccatggactgaatgagtttgtacctcaaagaactgctgcctatataagccaacatgatgttcatattggagaaatga 181  Q
    |||||||  ||||||||||| || ||||   ||||||||||||||||||||||||||||||| ||| | || ||| | ||| |||| ||||||||| |||    
T  39578263 actgggaaggtgacttacaacggtcatgagatgaatgagtttgtacctcaaagaactgctgcttatgtcagtcaaaacgatcttcacattggagaattga 39578164  T
Q  182 ctgtgagggaaaccttggctttctcagcaagatgccaaggagttgga 228  Q
    | || || ||||| ||||  ||||||||||||| |||||| ||||||    
T  39578163 cagttagagaaactttggaattctcagcaagattccaaggtgttgga 39578117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 245
Target Start/End: Complemental strand, 39568688 - 39568560
Alignment:
Q  117 tgagtttgtacctcaaagaactgctgcctatataagccaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaagatgc 216  Q
    ||||||||| || ||| |||||||||| ||| |    ||| ||||| |||| |||||||||||||| || || ||||||||||| ||||||||| ||  |    
T  39568688 tgagtttgtcccccaacgaactgctgcatatgtggatcaaaatgatcttcacattggagaaatgacagtaagagaaaccttggccttctcagcacgagtc 39568589  T
Q  217 caaggagttggatcacgttatggttagtc 245  Q
    |||||||||||| | ||||||||||||||    
T  39568588 caaggagttggacctcgttatggttagtc 39568560  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 244
Target Start/End: Complemental strand, 39625321 - 39625169
Alignment:
Q  91 gtgacttacaatggccatggactgaatgagtttgtacctcaaagaactgctgcctatataagccaacatgatgttcatattggagaaatgactgtgaggg 190  Q
    |||| ||| ||||| |||| | ||||||||||||| || |||||||||||||| ||| | || ||| |||||  |||  |||| ||| ||||||| || |    
T  39625321 gtgagttataatggtcatgaaatgaatgagtttgtgccacaaagaactgctgcttatgtcagtcaaaatgatactcaccttgg-gaattgactgtcagag 39625223  T
Q  191 aaaccttggctttctcagcaagatgccaaggagttggatcacgttatggttagt 244  Q
    |||||||||| || |||||||||   |||||||||||| | || ||||||||||    
T  39625222 aaaccttggccttttcagcaagagttcaaggagttggacctcgatatggttagt 39625169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 244
Target Start/End: Complemental strand, 39542578 - 39542498
Alignment:
Q  164 ttcatattggagaaatgactgtgagggaaaccttggctttctcagcaagatgccaaggagttggatcacgttatggttagt 244  Q
    |||| ||||||||||||||||| || ||||||||||| ||||| |||||   ||||||||||||  | |||||||||||||    
T  39542578 ttcacattggagaaatgactgttagagaaaccttggccttctcggcaagggtccaaggagttgggccgcgttatggttagt 39542498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 228
Target Start/End: Original strand, 39345128 - 39345265
Alignment:
Q  91 gtgacttacaatggccatggactgaatgagtttgtacctcaaagaactgctgcctatataagccaacatgatgttcatattggagaaatgactgtgaggg 190  Q
    |||||||| ||||| ||||   ||| ||| ||||| || |||||||||||||| ||| |    ||| ||||| |||| ||||||||| ||||||| || |    
T  39345128 gtgacttataatggtcatgagatgagtgaatttgtcccccaaagaactgctgcttatgtggatcaaaatgatcttcacattggagaattgactgttagag 39345227  T
Q  191 aaaccttggctttctcagcaagatgccaaggagttgga 228  Q
    |||| ||||| ||||| ||||||  |||||||||||||    
T  39345228 aaacattggccttctcggcaagagtccaaggagttgga 39345265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 227
Target Start/End: Complemental strand, 39592696 - 39592590
Alignment:
Q  121 tttgtacctcaaagaactgctgcctatataagccaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaagatgccaag 220  Q
    |||||||| |||||||||||||| ||| | || ||| ||||| ||||  |||||||| ||||||| || |||||  |||| ||||| ||||||  |||||    
T  39592696 tttgtaccccaaagaactgctgcttatgtcagtcaaaatgatcttcaccttggagaattgactgtcagagaaacgatggccttctccgcaagagtccaag 39592597  T
Q  221 gagttgg 227  Q
    | |||||    
T  39592596 gcgttgg 39592590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 228
Target Start/End: Original strand, 39333849 - 39333986
Alignment:
Q  91 gtgacttacaatggccatggactgaatgagtttgtacctcaaagaactgctgcctatataagccaacatgatgttcatattggagaaatgactgtgaggg 190  Q
    |||||||| ||||| ||||   ||| ||| ||||| || |||||||||||||| ||| |    ||| ||||| |||| ||||||||| ||||||| || |    
T  39333849 gtgacttataatggtcatgagatgagtgaatttgtcccccaaagaactgctgcatatgtggatcaaaatgatcttcacattggagaattgactgttagag 39333948  T
Q  191 aaaccttggctttctcagcaagatgccaaggagttgga 228  Q
    ||||  |||| ||||| ||||||  |||||||||||||    
T  39333949 aaacactggccttctcggcaagagtccaaggagttgga 39333986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 97 - 228
Target Start/End: Original strand, 4496102 - 4496233
Alignment:
Q  97 tacaatggccatggactgaatgagtttgtacctcaaagaactgctgcctatataagccaacatgatgttcatattggagaaatgactgtgagggaaacct 196  Q
    |||||||| ||| |||| ||||||||||||||   ||  ||| | || ||||| || ||| ||||||||||| |||||||||||||||| |  |||||||    
T  4496102 tacaatggacatagacttaatgagtttgtaccaagaaagacttcagcatatattagtcaaaatgatgttcatgttggagaaatgactgtaaaagaaacct 4496201  T
Q  197 tggctttctcagcaagatgccaaggagttgga 228  Q
    | | ||| ||||| ||||||||||||||||||    
T  4496202 tagatttttcagctagatgccaaggagttgga 4496233  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 228
Target Start/End: Complemental strand, 2152654 - 2152544
Alignment:
Q  118 gagtttgtacctcaaagaactgctgcctatataagccaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaagatgcc 217  Q
    |||||||| || ||||||||  | || ||| |||| ||| |||||  ||| |||||||||||||||||||| |||||  ||||||||||||||||||| |    
T  2152654 gagtttgttccacaaagaacatcagcttatgtaagtcaatatgataatcacattggagaaatgactgtgagagaaacactggctttctcagcaagatgtc 2152555  T
Q  218 aaggagttgga 228  Q
    |||| ||||||    
T  2152554 aaggggttgga 2152544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 228
Target Start/End: Complemental strand, 2164910 - 2164800
Alignment:
Q  118 gagtttgtacctcaaagaactgctgcctatataagccaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaagatgcc 217  Q
    |||||||| || ||||||||  | || |||||||| |||||||||  ||| |||||||||||||| || || |||||| | ||||||||||||||||| |    
T  2164910 gagtttgttccacaaagaacatccgcttatataagtcaacatgataatcacattggagaaatgaccgtaagagaaaccctagctttctcagcaagatgtc 2164811  T
Q  218 aaggagttgga 228  Q
    |||| ||||||    
T  2164810 aaggggttgga 2164800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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