View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4296_high_2 (Length: 562)
Name: NF4296_high_2
Description: NF4296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4296_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Original strand, 10201330 - 10201872
Alignment:
| Q |
1 |
gaaaatgtttacaaacaaccatacaacaattgaaccacaagaaatggaagatgaacttaaaattttggcttgtgtgtatgatcctcgacaagtatctgcg |
100 |
Q |
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| T |
10201330 |
gaaaatgttttcaaacaaccatacaacaattgaaccacaagaaatggaagatgaacttaaaattttggcttgtgtgtatgatcctcgacaagtatctgcg |
10201429 |
T |
|
| Q |
101 |
atactagccacaatactagcaatacatggctctaaaacatcaccttctaccacttatttaatgcacttaatagagcttgtgaagaaaatcaagtcaaact |
200 |
Q |
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| T |
10201430 |
atactagccacaatactagcaatacatggctctaaaacatcaccttccaccacttatttaatgcacttaatagagcttgtgaagaaaatcaagtcaaact |
10201529 |
T |
|
| Q |
201 |
tgttataccatgaaaaagaaaatggcgatatcagcgatgatgacgaagcctttggtggaaatgatgtggtggacattaataatgccctagataccttcac |
300 |
Q |
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| T |
10201530 |
tgttataccatgaaaaagaaaatggcgatatcagcgatgatgacgaagcctttggtggaaatgatgtggtggacattaataatgccctagataccttcac |
10201629 |
T |
|
| Q |
301 |
tgaagacacaaagattttggtccaacaaaaaaggacagtttcttcttttctaagtctgtatgaagaagtgtgcagcgaagcagaaaatcttcaagtatcg |
400 |
Q |
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| T |
10201630 |
tgaagacacaaagattttggtccaacaaaaaaggacagtttcttcttttctaagtctgtatgaagaagtgtgcagcgaagcagaaaatcttcaagtatcg |
10201729 |
T |
|
| Q |
401 |
attattcttcttccctttcacaagcatcaacgaatcgatggaaaacttgaaagcggaaaagaaggtataaggattactaatcagaaggttcttaggcatg |
500 |
Q |
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| T |
10201730 |
attattcttcttccctttcacaagcatcaacgaatcgatggaaaacttgaaagcggaaaagaaggtataaggattactaatcagaaggttcttaggcatg |
10201829 |
T |
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| Q |
501 |
caccttgttctgtcggtgtaattatagaaagaggacttactac |
543 |
Q |
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| T |
10201830 |
caccttgttctgtcggtgtaattatagaaagaggacttactac |
10201872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 534
Target Start/End: Original strand, 51740535 - 51741065
Alignment:
| Q |
1 |
gaaaatgtttacaaacaaccatacaacaattgaaccacaagaaatggaagatgaacttaaaattttggcttgtgtgtatgatcctcgacaagtatctgcg |
100 |
Q |
| |
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||||||||| |||| ||||||||| | |||||||||||||| |||||||| || ||| ||||||||||||||| ||||||||||| |||||||| | |
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| T |
51740535 |
gaaaatgttctcaaataaccatacagctattgaaccacaagagatggaagacgagcttcgaattttggcttgtgtatatgatcctcgtcaagtatcatca |
51740634 |
T |
|
| Q |
101 |
atactagccacaatactagcaatacatggctctaaaacatcaccttctaccacttatttaatgcacttaatagagcttgtgaagaaaatcaagtcaaact |
200 |
Q |
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||||| || |||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| |||| |||||||||||||| ||||| || || | |
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| T |
51740635 |
atacttgcaacaatactagcaatgcatggatctaaaacatcaccttcaaccacttatttaatgcacctaattgagcttgtgaagaagatcaaatccaatt |
51740734 |
T |
|
| Q |
201 |
tgttataccatgaaaaagaaaatggcgatatcagcgatgatgacgaagcctttggtggaaatgatgtggtggacattaataatgccctagataccttcac |
300 |
Q |
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| || | |||||||| ||||||| || | || || ||||| || | |||||| ||||| || || || ||||||||| | ||||| | ||||| |
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| T |
51740735 |
tattgtttcatgaaaaggaaaatgctgaccttagtgacgatgatgat---tatggtggcaatgacgtcgttgaaattaataattcattagatgcattcac |
51740831 |
T |
|
| Q |
301 |
tgaagacacaaagattttggtccaacaaaaaaggacagtttcttcttttctaagtctgtatgaagaagtgtgcagcgaagcagaaaatcttcaagtatcg |
400 |
Q |
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|| |||||||||||||||||| || |||| |||| |||| || ||||||| ||| |||||||||| || |||| ||||| ||| ||||||||||||| |
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| T |
51740832 |
tgcagacacaaagattttggttcaccaaagaagggcagtatcatcttttccaagcttgtatgaagatgtttgcaatgaagctgaagatcttcaagtatca |
51740931 |
T |
|
| Q |
401 |
attattcttcttccctttcacaagcatcaacgaatcgatggaaaacttgaaagcggaaaagaaggtataaggattactaatcagaaggttcttaggcatg |
500 |
Q |
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||||| |||||||| |||||||||||||||||||| ||||| ||| | ||||| ||||||||||||||||||||||||||||| ||||||||||| || | |
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| T |
51740932 |
attatccttcttccttttcacaagcatcaacgaattgatggtaaattagaaagtggaaaagaaggtataaggattactaatcaaaaggttcttagacacg |
51741031 |
T |
|
| Q |
501 |
caccttgttctgtcggtgtaattatagaaagagg |
534 |
Q |
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|||||||||| || ||||| ||||| |||||||| |
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| T |
51741032 |
caccttgttcagtaggtgttattatcgaaagagg |
51741065 |
T |
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