View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4296_high_3 (Length: 512)
Name: NF4296_high_3
Description: NF4296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4296_high_3 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 215 - 512
Target Start/End: Original strand, 30651496 - 30651793
Alignment:
| Q |
215 |
catcatggagggcaaaatgtaatggcataacgatttgccaaacaagacataagcccggttgcatcatcataagcatagctataagcatgaggacaaacac |
314 |
Q |
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| T |
30651496 |
catcatggagggcaaaatgtaatggcataacgatttgccaaacaagacataagcccggttgcatcatcataagcatagctataagcatgaggacaaacac |
30651595 |
T |
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| Q |
315 |
tcttaaaaacacgagcaaacatagttggcttgcaaattttcggatcagcaaattcaccaatgcaacaatacttatctgattttgtagccaaacaagcact |
414 |
Q |
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| T |
30651596 |
tcttaaaaacacgagcaaacatagttggcttgcaaattttcggatcagcaaattcaccagtgcaacaatacttatctgattttgtagccaaacaagcact |
30651695 |
T |
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| Q |
415 |
tttacaccccacaactttcccattatgcttcacaacaagttgagatggacaacaaccattcaaatcagcttgacaagaagcaattccacaaccaacac |
512 |
Q |
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| T |
30651696 |
tttacaccccacaactttcccattatgcttcacaacaagttgagatggacaacaaccattcaaatcagcttgacaagtagcaatgccacaaccaacac |
30651793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 30651293 - 30651413
Alignment:
| Q |
12 |
gaaatataatagcaatgttgaatgctcaatcaacaacttaaataattgaagtaattaaacatctttattacatgacaaaatcaaaattccagatgacata |
111 |
Q |
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| T |
30651293 |
gaaatataatagcaatgttgaatgctcaatcaacaacttaaataattgaagtaattaaacatctttcttacatgacaaaatcaaaattccagatgacata |
30651392 |
T |
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| Q |
112 |
gtactatgaatcactaacctt |
132 |
Q |
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| T |
30651393 |
gtactatgaatcactaacctt |
30651413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 277 - 509
Target Start/End: Original strand, 22787091 - 22787323
Alignment:
| Q |
277 |
atcatcataagcatagctataagcatgaggacaaacactcttaaaaacacgagcaaacatagttggcttgcaaattttcggatcagcaaattcaccaatg |
376 |
Q |
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| T |
22787091 |
atcatcataagcataactataagctttagggcaaatagccttaaagagattagcaaaaagtgtaggtttacaagttttaggatcagaataatctccagtg |
22787190 |
T |
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| Q |
377 |
caacaatacttatctgattttgtagccaaacaagcacttttacaccccacaactttcccattatgcttcacaacaagttgagatggacaacaaccattca |
476 |
Q |
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| T |
22787191 |
caacaatatttagcagattgcatagccaaacaagcacttttacaaccaacaactttcccatttctcttcacttcaagtgctgatggacaacaaacattca |
22787290 |
T |
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| Q |
477 |
aatcagcttgacaagaagcaattccacaaccaa |
509 |
Q |
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| T |
22787291 |
aatcaacttcacaagaagctattccacaaccaa |
22787323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 277 - 309
Target Start/End: Complemental strand, 41458154 - 41458122
Alignment:
| Q |
277 |
atcatcataagcatagctataagcatgaggaca |
309 |
Q |
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| T |
41458154 |
atcatcataagcatagctataagcttgaggaca |
41458122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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