View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4296_high_6 (Length: 403)
Name: NF4296_high_6
Description: NF4296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4296_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 14 - 384
Target Start/End: Complemental strand, 34551754 - 34551375
Alignment:
| Q |
14 |
agattgccctaatatggaattgttttcacgaggactttgtagtgcacagaatcttgaggatatcaacatatttcagaatgaattatggatcacctgctac |
113 |
Q |
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| T |
34551754 |
agattgccctaatatggaattgttttcacgaggactttgtagtgcacagaatcttgaggatatcaacatatgtcagaatgaattatgcatcaccagctac |
34551655 |
T |
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| Q |
114 |
ataaataagaatgacatgaatgccactatacaaagatctaaagcatgtgtaagcctcgtcttaatgtatcttaattacatatcacttatagtagacttaa |
213 |
Q |
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| T |
34551654 |
ataaataagaatgacatgaatgccactatacaaagatctaaagcatgtgtaagcctcgtcttaatgtatcttaattacatatcacttatagtacacttaa |
34551555 |
T |
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| Q |
214 |
ataatttcgacttaat---------aattgattaggagcaagccaataatatgctatttttagaatacaaatctgtcaatgcaattatgacatgttggga |
304 |
Q |
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| T |
34551554 |
ataatttcgacttaataattttaataattgattaggagcaagccaataatatgctatttttagaatacaaatctgtcaatgcaattatgacatgtttgga |
34551455 |
T |
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| Q |
305 |
tatttaaatcaatattttgtagctggaattgacaagttctgagatgttgaactggaaggagctaattgataaagacatgt |
384 |
Q |
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| T |
34551454 |
tatttaaatcaatattttgtaggtggaattgaaaagttctgagatgttgaactggaaggagctaattgataaagacatgt |
34551375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 109 - 384
Target Start/End: Complemental strand, 34563380 - 34563095
Alignment:
| Q |
109 |
gctacataaataagaatgacatgaatgccactatacaaagatctaaagcatgtgtaagcctcgtcttaatgtatcttaattacatatcacttatagtaga |
208 |
Q |
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| T |
34563380 |
gctacatacagaagaatgacatgaatgccactatacaaagatttaaagcatgtgtaagcctcgtcttaatgtttctaaattacttatcacttatagtaca |
34563281 |
T |
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| Q |
209 |
cttaaataatttcgacttaataa---------ttgattaggagcaagccaataatatgctatttttagaatacaaatctgtcaatgcaattatgacat-g |
298 |
Q |
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| T |
34563280 |
cttaaataatttcaacttaataattttattagttgattaggagcaagccattaatttgttatatttagaatacaagtctgttgatacaattaggagataa |
34563181 |
T |
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| Q |
299 |
ttgggatatttaaatcaatattttgtagctggaattgacaagttctgagatgttgaactggaaggagctaattgataaagacatgt |
384 |
Q |
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| T |
34563180 |
ttgagataattaaatgaatattttgtaggtggaattacaaagttctgagatgttgaactggacggagctaattgataaagacatgt |
34563095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 176
Target Start/End: Original strand, 133204 - 133271
Alignment:
| Q |
109 |
gctacataaataagaatgacatgaatgccactatacaaagatctaaagcatgtgtaagcctcgtctta |
176 |
Q |
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| T |
133204 |
gctacattcataagaatgacatgaatgctactatacaagggtttaaaacatttgtaagcctcgtctta |
133271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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