View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4296_high_7 (Length: 371)
Name: NF4296_high_7
Description: NF4296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4296_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 12 - 370
Target Start/End: Original strand, 18027576 - 18027959
Alignment:
| Q |
12 |
agagacttaagaagaatcagtcgacctcccaaagacatatttctacttttccatc---------------------aaaggataccaaatatgaagcttt |
90 |
Q |
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| T |
18027576 |
agagacttaagaagaatcagtcgacctcccaaagacatatttctacttttccatccagacaataatgcgatcaatcaaaggataccaaatatgaagcttt |
18027675 |
T |
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| Q |
91 |
atagggtccccgccaatgggcaaccctaagtacatgacaagaatgcggtcatgtttacaattcattactgaagtcgactcatgcaaccacgatcagccac |
190 |
Q |
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| T |
18027676 |
atagggtccccaccaatgggcaaccctaagtacatgacaagaacgcggtcatgtttacaattcattactgaagtcgactcatgcaaccatgatcagccac |
18027775 |
T |
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| Q |
191 |
atttactccaaacatcatgcatttgtgaaaattaatttttaggccggaaatatat----ttaaacaaaagtaacattgccttcaaggatctaatatttac |
286 |
Q |
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| T |
18027776 |
atttactccaaacatcatgcttttgtgaaaattaatttttaggccggaaatatatatcgtctaacaaaagtaacattgccttcaaggatctaatagttac |
18027875 |
T |
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| Q |
287 |
cctacttttagccccaaccaacagagtgtcatcaacgaactataaatgtgaaactggctcacctacttgtgtatgacatttaac |
370 |
Q |
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| T |
18027876 |
ccaacttttagccccaactaacagagtgtcatcaacgaactataaatgtgaaactgacacacctgcttgtgtatgacatttaac |
18027959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 142 - 279
Target Start/End: Original strand, 21397299 - 21397437
Alignment:
| Q |
142 |
tgtttacaattcattactgaagtcgactcatgcaaccacga-tcagccacatttactccaaacatcatgcatttgtgaaaattaatttttaggccggaaa |
240 |
Q |
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| T |
21397299 |
tgtttactattcatcaccaaagccgcctcatgcaaccacgacttaaccacattaattccaaacaacatgcttttgtgaaaattaacttttaaaccagaaa |
21397398 |
T |
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| Q |
241 |
tatatttaaacaaaagtaacattgccttcaaggatctaa |
279 |
Q |
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| T |
21397399 |
tctcttcaaacaaaattaaaactgccttcaatgatctaa |
21397437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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