View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4296_high_8 (Length: 352)
Name: NF4296_high_8
Description: NF4296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4296_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 17 - 328
Target Start/End: Original strand, 1079545 - 1079856
Alignment:
| Q |
17 |
atgaacttttggataattgatacttgaaacttgattcataagagcaacatagttcaccctagaatagcattctctgtttgtatcttccctagagttgaac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1079545 |
atgaacttttggataattgatacttgaaacttgattcataagagcaacatagttcaccctagaatagcattctctgtttgtatcttccctagagttgaac |
1079644 |
T |
|
| Q |
117 |
tcttgaatagtttgtcaaagaataattctgtcaagacaagtattacgaagagtgaaaatgatgtattattacatatggaatcagtagttacacaattatt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1079645 |
tcttgaatagtttgtcaaagaataattctgtcaagacaagtattacgaagagtgaaaatgatgtattattacatatggaatcagtagttacacaattatt |
1079744 |
T |
|
| Q |
217 |
tatagctagctgagcctgtacattagcttataataggtaggcaacatcatataagaagtaaagataagttatactatgttacttggagtctaagctatct |
316 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1079745 |
catagctagctgagcctgtacattagcttacaataggtaggcaacatcatataagaagtaaagataagttatactatgttacttggagtctaagctatct |
1079844 |
T |
|
| Q |
317 |
tctatactagta |
328 |
Q |
| |
|
|||||||||||| |
|
|
| T |
1079845 |
tctatactagta |
1079856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 2837389 - 2837309
Alignment:
| Q |
17 |
atgaacttttggataattgatacttgaaacttgattcataagagcaacatagttcaccctagaatagcattctctgtttgt |
97 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2837389 |
atgaacttttggataattgatacctgaaacttgattcagaagagaaacatagttcaccctagaatagcattctctgtttgt |
2837309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 325
Target Start/End: Complemental strand, 31615966 - 31615916
Alignment:
| Q |
275 |
taaagataagttatactatgttacttggagtctaagctatcttctatacta |
325 |
Q |
| |
|
||||| |||||||||||| || |||||||||||||||||||||| ||||| |
|
|
| T |
31615966 |
taaagctaagttatactagattgcttggagtctaagctatcttctttacta |
31615916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 199 - 310
Target Start/End: Original strand, 42527342 - 42527456
Alignment:
| Q |
199 |
agtagttacacaattatttatagctagctgagcctgtacattagcttataataggtaggcaacatcatataagaagtaaagataagttatacta---tgt |
295 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| || | || ||||||||||||||||||||||||||| ||| | ||| || |||| ||| |
|
|
| T |
42527342 |
agtagttacacaactatttatagctagctgagcctgtacaataccatacaataggtaggcaacatcatataagaagaaaatagaagctacactatgttgt |
42527441 |
T |
|
| Q |
296 |
tacttggagtctaag |
310 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
42527442 |
tacttggagtctaag |
42527456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University