View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4296_low_1 (Length: 774)

Name: NF4296_low_1
Description: NF4296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4296_low_1
NF4296_low_1
[»] chr4 (14 HSPs)
chr4 (16-599)||(53472289-53472892)
chr4 (599-764)||(53472093-53472258)
chr4 (598-764)||(9009980-9010146)
chr4 (198-368)||(53469652-53469823)
chr4 (240-371)||(27272572-27272705)
chr4 (198-337)||(32015122-32015262)
chr4 (229-382)||(10395953-10396107)
chr4 (598-715)||(29234732-29234849)
chr4 (226-377)||(50887389-50887540)
chr4 (198-284)||(29235206-29235291)
chr4 (198-283)||(9010892-9010977)
chr4 (245-377)||(21206356-21206491)
chr4 (427-516)||(29234936-29235030)
chr4 (200-368)||(13816904-13817073)
[»] chr2 (7 HSPs)
chr2 (198-395)||(8761138-8761343)
chr2 (198-329)||(37965518-37965651)
chr2 (198-319)||(10128460-10128582)
chr2 (251-395)||(25550091-25550236)
chr2 (323-391)||(37965255-37965323)
chr2 (198-240)||(15140727-15140769)
chr2 (210-287)||(15140779-15140856)
[»] chr3 (5 HSPs)
chr3 (198-395)||(30046377-30046576)
chr3 (226-377)||(25889611-25889763)
chr3 (198-314)||(31141363-31141480)
chr3 (228-265)||(25578999-25579036)
chr3 (602-651)||(30046656-30046705)
[»] chr6 (16 HSPs)
chr6 (643-748)||(22258704-22258809)
chr6 (239-395)||(16910069-16910225)
chr6 (198-368)||(14721668-14721838)
chr6 (229-357)||(13557985-13558114)
chr6 (229-370)||(2921839-2921981)
chr6 (228-372)||(27340600-27340743)
chr6 (228-372)||(27401340-27401483)
chr6 (598-725)||(16909706-16909833)
chr6 (253-377)||(13555994-13556119)
chr6 (226-368)||(11678827-11678966)
chr6 (232-357)||(2923168-2923295)
chr6 (250-356)||(11677133-11677240)
chr6 (209-334)||(22880002-22880128)
chr6 (415-483)||(16909953-16910022)
chr6 (349-395)||(15921056-15921103)
chr6 (209-334)||(22898117-22898243)
[»] chr7 (9 HSPs)
chr7 (229-372)||(7961767-7961911)
chr7 (226-377)||(11269944-11270096)
chr7 (210-393)||(1716602-1716787)
chr7 (210-286)||(1103129-1103205)
chr7 (290-372)||(36207996-36208078)
chr7 (198-260)||(1345068-1345129)
chr7 (199-248)||(1103078-1103127)
chr7 (324-368)||(11269802-11269846)
chr7 (308-362)||(11280342-11280396)
[»] chr1 (6 HSPs)
chr1 (229-357)||(22827037-22827166)
chr1 (229-357)||(22840959-22841088)
chr1 (198-369)||(24284782-24284954)
chr1 (288-368)||(20260944-20261024)
chr1 (198-337)||(24272707-24272846)
chr1 (273-357)||(22826642-22826727)
[»] chr5 (5 HSPs)
chr5 (611-748)||(20289716-20289853)
chr5 (226-361)||(19670657-19670793)
chr5 (226-354)||(32795543-32795672)
chr5 (245-339)||(26896586-26896681)
chr5 (226-302)||(32796359-32796436)
[»] chr8 (2 HSPs)
chr8 (211-335)||(33897182-33897307)
chr8 (276-357)||(42001905-42001987)
[»] scaffold0007 (1 HSPs)
scaffold0007 (198-255)||(260473-260530)


Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 16 - 599
Target Start/End: Complemental strand, 53472892 - 53472289
Alignment:
Q  16 catatcaacccacattcacgtttttaaagtacatgacaacagtcactgtccgtgtacactattgttcagttcaaaactcactttataaaaatttaatcgg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53472892 catatcaacccacattcacgtttttaaagtacatgacaacagtcactgtccgtgtacactattgttcagttcaaaactcactttataaaaatttaatcgg 53472793  T
Q  116 ttcaaaacttaactcaagttcgtcacaattttttctacttaaattcgaatggtttcttccaagtctaatacactcccaagtattgaaatatgtcttgaat 215  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||| |||||||    
T  53472792 ttcaaaacttaattcaagttcgtcacaattttttctacttaaattcgaatggtttcttccaagttttatacactccaaagtattgaaatatgccttgaat 53472693  T
Q  216 tagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagtttgtgtattagtatttcatgcaccaatg 315  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||    
T  53472692 tagtgttgggaaaatgttccacatcggataatacgaagaaatatgcaaaga-cttgccatataaataaaagtttgtgtgttagtatttcatgcaccaatg 53472594  T
Q  316 gttaatgggttttgttatagctagcgttacctctactattcagtatctgtaattatcgattatagtgaattcttt--------------------tcagt 395  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    | |||    
T  53472593 gttagtgggttttgctatagctagcgttacctctactattcagtatctgtaattatcgattatagtgaattctttttagtggctctgcttgtggattagt 53472494  T
Q  396 cagtacattgctggataccatcttgtgtcatttttcattctgcctttaactatattgttattattcttgcgtcttgttataacaaactggtatcagagct 495  Q
    |||||||||| |||||||||||||||||||||||||||| || |||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  53472493 cagtacattgttggataccatcttgtgtcatttttcattttgtcttttactatatcgttattattcttgcgtcttgttataacaaattggtatcagagct 53472394  T
Q  496 ggtttgaatctgttcaggcggaaacaatggttgg-ggtaaaagtttgaaaacaatggttggaggtaaaagtttgaaagtcgataagatcactgggaggaa 594  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||    
T  53472393 ggtttgaatttgttcaggcggaaacaatggttggaggtaaaagtttgaaaacaatggttggaggtaaaagtttgaaagtcgacaagttcactaggaggaa 53472294  T
Q  595 taatt 599  Q
    |||||    
T  53472293 taatt 53472289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 599 - 764
Target Start/End: Complemental strand, 53472258 - 53472093
Alignment:
Q  599 tgcttaaacagcaaggtctatgtacacctttgttaaatcctgcaccaaaccctatatttgctgatatcgccactctagagtagaagacacattctacgtt 698  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||| || |||||||||||||||||||    
T  53472258 tgcttaaacagcaaggtctatgtacacctttgttaaagcctgcaccaaaccctctatctgctgatatcgccactctaaaggagaagacacattctacgtt 53472159  T
Q  699 gctccttgctttggaagatcatatcatcactaaggttgctgaagaggataccgctgccggtctgtg 764  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  53472158 gctccttgctttggaagatcatatcatcactaaggttgctgaagaagataccgctgccggtctgtg 53472093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 598 - 764
Target Start/End: Complemental strand, 9010146 - 9009980
Alignment:
Q  598 ttgcttaaacagcaaggtctatgtacacctttgttaaatcctgcaccaaaccctatatttgctgatatcgccactctagagtagaagacacattctacgt 697  Q
    ||||||||||| |||| |||||| |  ||||| ||||| | ||| ||||||||| ||  | |||||||||||||  | ||| ||||| ||||||||||||    
T  9010146 ttgcttaaacaacaagatctatggatgccttttttaaagcttgcgccaaaccctttacctactgatatcgccaccatggaggagaaggcacattctacgt 9010047  T
Q  698 tgctccttgctttggaagatcatatcatcactaaggttgctgaagaggataccgctgccggtctgtg 764  Q
    ||||||||| |||||||||||||||||||||| |||||| ||||||||||| |||| || |||||||    
T  9010046 tgctccttgttttggaagatcatatcatcactgaggttgttgaagaggatatcgctaccagtctgtg 9009980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 198 - 368
Target Start/End: Complemental strand, 53469823 - 53469652
Alignment:
Q  198 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtatt 296  Q
    |||||||||| ||| ||||| |||||| ||||||| | ||||| ||||||| ||||||||||||||||| || | ||||||||||||||| |||||| ||    
T  53469823 ttgaaatatgcctttaattaatgttgggaaaatgttctacatcagataatatgaagaaatatgcaaagacttggtcatataaataaaagtcttgtgtgtt 53469724  T
Q  297 agtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattcagtatctgtaat 368  Q
    |||||||| || | |||| |||| ||| ||||  |||||| |  ||||||| || |||||||||||||||||    
T  53469723 agtatttcttgaatcaatagttagtggattttactatagccaatgttacctatattattcagtatctgtaat 53469652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 240 - 371
Target Start/End: Original strand, 27272572 - 27272705
Alignment:
Q  240 cggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatggg-ttttgttatagct 337  Q
    ||||||||| |||||||||||||||| ||| | ||||||||||||||| |||||| |||||||||| ||||||||| |||| |||| ||||| |||||||    
T  27272572 cggataatatgaagaaatatgcaaaggtttggtcatataaataaaagtcttgtgtgttagtatttcttgcaccaatagttagtgggtttttgctatagct 27272671  T
Q  338 agcgttacctctactattcagtatctgtaattat 371  Q
    ||| |||| |||||||||||  || |||||||||    
T  27272672 agcattacttctactattcaaaatttgtaattat 27272705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 198 - 337
Target Start/End: Original strand, 32015122 - 32015262
Alignment:
Q  198 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag-tttgtgtatt 296  Q
    |||||||||||||||||||||||||| ||||| ||| |||||   |||||| ||||| ||||||||||| || || | ||||||||| | ||||||| ||    
T  32015122 ttgaaatatgtcttgaattagtgttgtaaaaaagtctcacataaaataataggaagatatatgcaaagacttggcaacataaataaaggttttgtgtgtt 32015221  T
Q  297 agtatttcatgcaccaatggttaatgggttttgttatagct 337  Q
    |||||||| ||||||||| |||| ||||||||| |||||||    
T  32015222 agtatttcttgcaccaatagttagtgggttttgctatagct 32015262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 229 - 382
Target Start/End: Original strand, 10395953 - 10396107
Alignment:
Q  229 atgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttt 327  Q
    ||||| |||||| || || | ||||||||||||||||| |  ||||||||||||||||  |||||| |||||||||| |||| |||| |||| ||||||     
T  10395953 atgtctcacatcagagaagatgaagaaatatgcaaagactcggccatataaataaaagccttgtgtgttagtatttcttgcatcaatagttagtgggtta 10396052  T
Q  328 tgttatagctagcgttacctctactattcagtatctgtaattatcgattatagtg 382  Q
    || ||||| | | ||| | ||||||||||||||||||| ||||||||||||||||    
T  10396053 tgctatagatggtgttccttctactattcagtatctgtgattatcgattatagtg 10396107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 598 - 715
Target Start/End: Complemental strand, 29234849 - 29234732
Alignment:
Q  598 ttgcttaaacagcaaggtctatgtacacctttgttaaatcctgcaccaaaccctatatttgctgatatcgccactctagagtagaagacacattctacgt 697  Q
    |||||||||||||| |||||||  |||||||||||||| |||||| |||| ||| ||  ||||||||||| |||||| ||| | ||| |||| |||||||    
T  29234849 ttgcttaaacagcatggtctatagacacctttgttaaagcctgcatcaaatcctctacctgctgatatcgtcactctggaggaaaaggcacaatctacgt 29234750  T
Q  698 tgctccttgctttggaag 715  Q
    ||||||||||||||||||    
T  29234749 tgctccttgctttggaag 29234732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 226 - 377
Target Start/End: Complemental strand, 50887540 - 50887389
Alignment:
Q  226 aaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatggg 324  Q
    |||||||||| ||||| |||||| ||| ||||||||||||  || |||||||||||||| || |||||  || || || | | ||| ||| |||| ||||    
T  50887540 aaaatgtcccgcatcgaataatatgaa-aaatatgcaaaggcttggccatataaataaatgtcttgtgcgttggttttgcttacactaatagttagtggg 50887442  T
Q  325 ttttgttatagctagcgttacctctactattcagtatctgtaattatcgatta 377  Q
    ||||| |||||||||  |||||||||||||| ||||| |||||||||| ||||    
T  50887441 ttttgctatagctagtattacctctactatttagtatatgtaattatcaatta 50887389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 198 - 284
Target Start/End: Complemental strand, 29235291 - 29235206
Alignment:
Q  198 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaa 284  Q
    |||||||||  ||||||||| |||||| ||||| ||||||||||||| ||| ||| ||||||||||||| || ||||||||||||||    
T  29235291 ttgaaatattccttgaatta-tgttgggaaaatatcccacatcggattatatgaaaaaatatgcaaagacttggccatataaataaa 29235206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 198 - 283
Target Start/End: Complemental strand, 9010977 - 9010892
Alignment:
Q  198 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataa 283  Q
    |||||||||| || ||||||||||| | || |||||||||||||||| ||| |||||||||||| | || || |||||||||||||    
T  9010977 ttgaaatatgcctggaattagtgttaggaatatgtcccacatcggatgatatgaagaaatatgctatgacttggccatataaataa 9010892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 245 - 377
Target Start/End: Original strand, 21206356 - 21206491
Alignment:
Q  245 aatacgaagaaatatgcaaagattttgccatataaataaaag-tttgtgtattagtatttca-tgcaccaatggttaatggg-ttttgttatagctagcg 341  Q
    ||||||||||||||| |||||  || | ||||||||||||||   ||||||||||||||| | | ||||||| |||| |||| ||||||||||| ||||     
T  21206356 aatacgaagaaatatacaaaggcttggtcatataaataaaagccatgtgtattagtattttattacaccaatagttagtgggtttttgttatagttagca 21206455  T
Q  342 ttacctctactattcagtatctgtaattatcgatta 377  Q
    |||| |||| ||||||  || |||||||||| ||||    
T  21206456 ttacttctattattcaaaatttgtaattatcaatta 21206491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 427 - 516
Target Start/End: Complemental strand, 29235030 - 29234936
Alignment:
Q  427 ttttcattctgcctttaactatat-----tgttattattcttgcgtcttgttataacaaactggtatcagagctggtttgaatctgttcaggcgg 516  Q
    |||||||||||||||| |||||||     ||| |||||||| |||||  ||||||||||||| ||| ||||||||||| | || |||||||||||    
T  29235030 ttttcattctgccttttactatatattattgtcattattctcgcgtcgcgttataacaaactagtaccagagctggttcggatatgttcaggcgg 29234936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 368
Target Start/End: Original strand, 13816904 - 13817073
Alignment:
Q  200 gaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaa-agtttgtgtattag 298  Q
    ||||||||  |||||||| |||||| |||| ||| ||||||| | |||| |||||||||||| |||| || | |||||||||||| |  || ||| |||     
T  13816904 gaaatatgcattgaattaatgttgggaaaaagtctcacatcgaagaatatgaagaaatatgcgaagacttggtcatataaataaagaccttatgtgttat 13817003  T
Q  299 tatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattcagtatctgtaat 368  Q
    |||||| || || ||| |||| || ||||||  ||||||||  || || || ||||||||||| ||||||    
T  13817004 tatttcttgtacaaatagttagtgagttttgcgatagctagtattgccactgctattcagtatttgtaat 13817073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 3e-53; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 198 - 395
Target Start/End: Complemental strand, 8761343 - 8761138
Alignment:
Q  198 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgc-catataaataaaagt-ttgtgtat 295  Q
    ||||||||||||||||||| ||||||| ||||||||||||||| ||||||| ||||||||||||||| | ||||  ||||||||||||||| |||||| |    
T  8761343 ttgaaatatgtcttgaatttgtgttgggaaaatgtcccacatcagataatatgaagaaatatgcaaatactttggtcatataaataaaagtcttgtgtgt 8761244  T
Q  296 tagtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattcagtatctgta------attatcgattatagtgaattctt 389  Q
    ||||||||| ||||||||| |||| ||| |||||||||||||||| ||| |||||||||||||||||||||      |||||| ||||||||||||||||    
T  8761243 tagtatttcttgcaccaattgttagtggattttgttatagctagcattatctctactattcagtatctgtaatctggattatcaattatagtgaattctt 8761144  T
Q  390 ttcagt 395  Q
    ||||||    
T  8761143 ttcagt 8761138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 198 - 329
Target Start/End: Complemental strand, 37965651 - 37965518
Alignment:
Q  198 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag--tttgtgtat 295  Q
    |||||||||| |||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| || |  |||||||||||||  ||||||| |    
T  37965651 ttgaaatatgccttgaattagtgttgggaaaatgtctcacatcggataatatgaagaaatatgcaaagacttggatatataaataaaagtctttgtgtgt 37965552  T
Q  296 tagtatttcatgcaccaatggttaatgggttttg 329  Q
    ||||||||| ||||||||| ||||||||||||||    
T  37965551 tagtatttcttgcaccaatagttaatgggttttg 37965518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 198 - 319
Target Start/End: Original strand, 10128460 - 10128582
Alignment:
Q  198 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtatt 296  Q
    |||||||||||| |||||||||||||||||||| | |||||||||| |||| ||||||||||| ||||| || | ||||||||||||||| |||||| ||    
T  10128460 ttgaaatatgtcctgaattagtgttggaaaaatattccacatcggagaatatgaagaaatatggaaagacttggtcatataaataaaagtcttgtgtgtt 10128559  T
Q  297 agtatttcatgcaccaatggtta 319  Q
    |||||||| ||||||||| ||||    
T  10128560 agtatttcttgcaccaatagtta 10128582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 251 - 395
Target Start/End: Original strand, 25550091 - 25550236
Alignment:
Q  251 aagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctct 349  Q
    |||||||||| |||||||| ||||||||||||||||| |||||| | |||||||| || || ||| |||| ||| ||||  ||||||| | ||||||| |    
T  25550091 aagaaatatgtaaagatttggccatataaataaaagtcttgtgtgt-agtatttcttggactaatagttagtggattttcctatagctggagttaccttt 25550189  T
Q  350 actattcagtatctgtaattatcgattatagt-gaattcttttcagt 395  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  25550190 actattcagtatctgtaattatcgattatagtagaattcttttcagt 25550236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 323 - 391
Target Start/End: Complemental strand, 37965323 - 37965255
Alignment:
Q  323 ggttttgttatagctagcgttacctctactattcagtatctgtaattatcgattatagtgaattctttt 391  Q
    ||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37965323 ggttttgctataggtaacgttacctctactattcagtatctgtaattatcgattatagtgaattctttt 37965255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 15140727 - 15140769
Alignment:
Q  198 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatc 240  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  15140727 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatc 15140769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 210 - 287
Target Start/End: Original strand, 15140779 - 15140856
Alignment:
Q  210 ttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt 287  Q
    ||||||||||||||| |  |||||||||||||| ||| | ||||||||||| |||||||| | |||||||||||||||    
T  15140779 ttgaattagtgttgggattatgtcccacatcggttaaaatgaagaaatatgtaaagatttggtcatataaataaaagt 15140856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 1e-40; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 198 - 395
Target Start/End: Original strand, 30046377 - 30046576
Alignment:
Q  198 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaa--tatgcaaagattttgccatataaataaaag-tttgtgta 294  Q
    |||||||||| ||||||||| |||||| |||||||| || ||||||||||| ||| |||  |||||||||| ||  ||||||||||||||| |||||||     
T  30046377 ttgaaatatgccttgaattaatgttgggaaaatgtctcatatcggataatatgaaaaaaaatatgcaaagacttgaccatataaataaaagctttgtgtg 30046476  T
Q  295 ttagtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattcagtatctgtaattatcgattatagtgaattcttttcag 394  Q
    |||||||||| || || ||| |||| | ||||||| ||||||||||||||||||||||||||| ||| || |||||||||||| | ||||||||||||||    
T  30046477 ttagtatttcttgtac-aatagttagtcggttttgctatagctagcgttacctctactattcaatatatgcaattatcgattacattgaattcttttcag 30046575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 226 - 377
Target Start/End: Original strand, 25889611 - 25889763
Alignment:
Q  226 aaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatggg 324  Q
    ||||||||||||||||||||| | |||||  ||||||||| ||| | ||||||||||||||| |||| | |||||||||| ||||||||| |||| ||||    
T  25889611 aaaatgtcccacatcggataacatgaagagttatgcaaaggtttggtcatataaataaaagtcttgtatgttagtatttcttgcaccaatagttagtggg 25889710  T
Q  325 ttttgttatagctagcgttacctctactattcagtatctgtaattatcgatta 377  Q
    ||||| ||||||||||  |||||||| |||| ||| | |||||||||| ||||    
T  25889711 ttttgctatagctagcagtacctctattatttagtctttgtaattatcaatta 25889763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 198 - 314
Target Start/End: Original strand, 31141363 - 31141480
Alignment:
Q  198 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtatt 296  Q
    |||||||||  ||| || || |||| |||||| ||| |||||| || |||| |||||||||||||||||||| ||||||||||||||||| ||| || ||    
T  31141363 ttgaaatataacttaaaatattgttagaaaaaagtctcacatcagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgtt 31141462  T
Q  297 agtatttcatgcaccaat 314  Q
    |||||||| | |||||||    
T  31141463 agtatttcttacaccaat 31141480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 228 - 265
Target Start/End: Complemental strand, 25579036 - 25578999
Alignment:
Q  228 aatgtcccacatcggataatacgaagaaatatgcaaag 265  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  25579036 aatgtctcacatcggataatatgaagaaatatgcaaag 25578999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 602 - 651
Target Start/End: Original strand, 30046656 - 30046705
Alignment:
Q  602 ttaaacagcaaggtctatgtacacctttgttaaatcctgcaccaaaccct 651  Q
    ||||||| || |||||||| | |||||||||||| |||||||||||||||    
T  30046656 ttaaacaacagggtctatggagacctttgttaaagcctgcaccaaaccct 30046705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 6e-36; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 643 - 748
Target Start/End: Original strand, 22258704 - 22258809
Alignment:
Q  643 ccaaaccctatatttgctgatatcgccactctagagtagaagacacattctacgttgctccttgctttggaagatcatatcatcactaaggttgctgaag 742  Q
    ||||||||| || ||||||||||||||||||| | | |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  22258704 ccaaaccctctacttgctgatatcgccactctggtggagaagacacattctgcgctgctccttgctttggaagatcatatcatcactaaggttgctgaag 22258803  T
Q  743 aggata 748  Q
    ||||||    
T  22258804 aggata 22258809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 239 - 395
Target Start/End: Complemental strand, 16910225 - 16910069
Alignment:
Q  239 tcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttttgttatagct 337  Q
    |||||||||| |||| |||||||||||| || ||  ||||||||||||| |||||| |||||||||  ||| ||||| |||  || |||||| |||||||    
T  16910225 tcggataatatgaaggaatatgcaaagacttggcattataaataaaagtattgtgtgttagtatttgttgcgccaatagtttgtgtgttttgctatagct 16910126  T
Q  338 agcgttacctctactattcagtatctgtaattatcgattatagtgaattcttttcagt 395  Q
    ||||| || | |||||||||||||||||||||||||||||||||||||||||||||||    
T  16910125 agcgt-acatttactattcagtatctgtaattatcgattatagtgaattcttttcagt 16910069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 198 - 368
Target Start/End: Original strand, 14721668 - 14721838
Alignment:
Q  198 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag-tttgtgtatt 296  Q
    |||| ||||| | ||||||| |||||| |||||||||||||||||| ||||  ||||||||||||||||||| ||| ||||||||||||  |||| |||     
T  14721668 ttgacatatgccatgaattaatgttgggaaaatgtcccacatcggagaatagaaagaaatatgcaaagatttggcc-tataaataaaagccttgtttata 14721766  T
Q  297 agtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattcagtatctgtaat 368  Q
    |||||||| |||| |||| ||||||||||||||||||| ||    |||||| |||||||| |||||||||||    
T  14721767 agtatttcttgcagcaatagttaatgggttttgttatatctgatattacctatactattcggtatctgtaat 14721838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 229 - 357
Target Start/End: Complemental strand, 13558114 - 13557985
Alignment:
Q  229 atgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttt 327  Q
    |||||||||||||||||||| ||||||||||||||||  || | ||||||||||||||  |||||| |||||||||||||||||||| |||| ||| |||    
T  13558114 atgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatataaataaaagcattgtgtgttagtatttcatgcaccaatagttagtggattt 13558015  T
Q  328 tgttatagctagcgttacctctactattca 357  Q
    || ||| |||||| |||| |||||||||||    
T  13558014 tgctattgctagcattacttctactattca 13557985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 229 - 370
Target Start/End: Complemental strand, 2921981 - 2921839
Alignment:
Q  229 atgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttt 327  Q
    ||||| |||||||||||||| |||||||||||||| || || |  |||||||||||||| || ||| |||||||||| ||||||||| |||| |||||||    
T  2921981 atgtctcacatcggataatatgaagaaatatgcaatgacttggtaatataaataaaagtcttatgtgttagtatttcttgcaccaatagttagtgggttt 2921882  T
Q  328 tgttatagctagcgttacctctactattcagtatctgtaatta 370  Q
    || |||||||||| |||| |||| ||||||  || ||||||||    
T  2921881 tgctatagctagcattacgtctaatattcaaaatttgtaatta 2921839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 228 - 372
Target Start/End: Complemental strand, 27340743 - 27340600
Alignment:
Q  228 aatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagtttgtgtattagtatttcatgcaccaatggttaatgggttt 327  Q
    ||||||||||||||||||||| ||||||||||||||||  || | |||||||||||||   ||||| ||||||| || || |||||| |||| |||||||    
T  27340743 aatgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatataaataaaa-actgtgtgttagtatatcttgtaccaatagttagtgggttt 27340645  T
Q  328 tgttatagctagcgttacctctactattcagtatctgtaattatc 372  Q
    || |||| ||||| |||| |||||||||||  || ||||||||||    
T  27340644 tgctataactagcattacttctactattcaaaatttgtaattatc 27340600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 228 - 372
Target Start/End: Complemental strand, 27401483 - 27401340
Alignment:
Q  228 aatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagtttgtgtattagtatttcatgcaccaatggttaatgggttt 327  Q
    ||||||||||||||||||||| ||||||||||||||||  || | |||||||||||||   ||||| ||||||| || || |||||| |||| |||||||    
T  27401483 aatgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatataaataaaa-actgtgtgttagtatatcttgtaccaatagttagtgggttt 27401385  T
Q  328 tgttatagctagcgttacctctactattcagtatctgtaattatc 372  Q
    || |||| ||||| |||| |||||||||||  || ||||||||||    
T  27401384 tgctataactagcattacttctactattcaaaatttgtaattatc 27401340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 598 - 725
Target Start/End: Complemental strand, 16909833 - 16909706
Alignment:
Q  598 ttgcttaaacagcaaggtctatgtacacctttgttaaatcctgcaccaaaccctatatttgctgatatcgccactctagagtagaagacacattctacgt 697  Q
    |||||||||||||| |||||||| |||||||||||||| ||||| ||||||||| ||   |||||||| |  ||||| |   ||||| |||||||||||     
T  16909833 ttgcttaaacagcagggtctatggacacctttgttaaagcctgcgccaaaccctctaccagctgatattgaaactctggtagagaaggcacattctacga 16909734  T
Q  698 tgctccttgctttggaagatcatatcat 725  Q
    |||||||||||||||||||| |||||||    
T  16909733 tgctccttgctttggaagattatatcat 16909706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 253 - 377
Target Start/End: Complemental strand, 13556119 - 13555994
Alignment:
Q  253 gaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctac 351  Q
    |||||||||||||  || | ||||||||||||||  |||||| |||||||||| ||||||||| |||| ||||||||| |||||||||| |||| |||||    
T  13556119 gaaatatgcaaaggcttggtcatataaataaaagccttgtgtgttagtatttcttgcaccaatagttactgggttttgctatagctagcattacttctac 13556020  T
Q  352 tattcagtatctgtaattatcgatta 377  Q
    ||||||  || |||||||||| ||||    
T  13556019 tattcaaaatttgtaattatcaatta 13555994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 226 - 368
Target Start/End: Original strand, 11678827 - 11678966
Alignment:
Q  226 aaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatggg 324  Q
    ||||||||||||||||||||||| ||||||||||||||||  || | ||| ||||||||| | |||||| ||||||||||   ||||||    || |||     
T  11678827 aaaatgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatgtaaataaaactcttgtgtgttagtatttctaacaccaa----tagtgga 11678922  T
Q  325 ttttgttatagctagcgttacctctactattcagtatctgtaat 368  Q
    ||||| ||||| |||| |||||||||||||||||||| ||||||    
T  11678923 ttttgctatagttagcattacctctactattcagtatttgtaat 11678966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 232 - 357
Target Start/End: Complemental strand, 2923295 - 2923168
Alignment:
Q  232 tcccacatcggataatacgaagaaatatgc-aaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttttg 329  Q
    ||||||||||||||||| |||||||||||| ||||  || | ||||||||||||||| |||||| |||||| ||| ||||| ||| |||| ||||| |||    
T  2923295 tcccacatcggataatatgaagaaatatgcaaaaggcttggtcatataaataaaagtcttgtgtgttagtacttcttgcactaatagttagtgggtcttg 2923196  T
Q  330 ttatagctagcgttacctctactattca 357  Q
    |||||||||   |||| |||||||||||    
T  2923195 ttatagctaatattacttctactattca 2923168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 250 - 356
Target Start/End: Original strand, 11677133 - 11677240
Alignment:
Q  250 gaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctc 348  Q
    ||||||||||||||||  ||   ||||||||||||| | |||||| ||||||||||   ||||||| ||||  |||||||  |||||||||| |||||||    
T  11677133 gaagaaatatgcaaaggattgatcatataaataaaactcttgtgtgttagtatttctaacaccaatagttagcgggttttcctatagctagcattacctc 11677232  T
Q  349 tactattc 356  Q
    ||||||||    
T  11677233 tactattc 11677240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 209 - 334
Target Start/End: Complemental strand, 22880128 - 22880002
Alignment:
Q  209 cttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag-tttgtgtattagtatttcatg 307  Q
    ||||||||||||||||||||| ||| |||| | || ||||  |||||||||  ||| | || | |||||||||||| | ||||||| ||| |||||| ||    
T  22880128 cttgaattagtgttggaaaaaagtcacacaacagagaatagaaagaaatatataaatacttggtcatataaataaaggttttgtgtgttaatatttcttg 22880029  T
Q  308 caccaatggttaatgggttttgttata 334  Q
    |||||||  ||| ||||||||| ||||    
T  22880028 caccaataattagtgggttttgctata 22880002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 415 - 483
Target Start/End: Complemental strand, 16910022 - 16909953
Alignment:
Q  415 atcttgtgtcatttttcattctgcctttaactat-attgttattattcttgcgtcttgttataacaaact 483  Q
    |||||||||| ||||||||| || |||| ||||| ||||| |||||||| ||||| ||||||||||||||    
T  16910022 atcttgtgtcgtttttcattatgtcttttactattattgtcattattctcgcgtcctgttataacaaact 16909953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 349 - 395
Target Start/End: Complemental strand, 15921103 - 15921056
Alignment:
Q  349 tactattcagtatctgtaattatcgattatagt-gaattcttttcagt 395  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||||||    
T  15921103 tactattcagtatctgtaatcatcgattttagtggaattcttttcagt 15921056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 209 - 334
Target Start/End: Complemental strand, 22898243 - 22898117
Alignment:
Q  209 cttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag-tttgtgtattagtatttcatg 307  Q
    ||||||||||||||||||||| ||| |||| | || ||||  |||||||||  ||| | || | |||||||||||| | ||| ||| ||| |||||| ||    
T  22898243 cttgaattagtgttggaaaaaagtcacacaacagagaatagaaagaaatatataaatacttggtcatataaataaaggttttttgtgttaatatttcttg 22898144  T
Q  308 caccaatggttaatgggttttgttata 334  Q
    |||||||  ||| ||||||||| ||||    
T  22898143 caccaataattagtgggttttgctata 22898117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 6e-33; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 229 - 372
Target Start/End: Original strand, 7961767 - 7961911
Alignment:
Q  229 atgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttt 327  Q
    ||||||||||||| |||||| |||||||||||||||| ||| | ||||||||||||||  |||||| |||||||||| ||||||||| |||| |||||||    
T  7961767 atgtcccacatcgcataatatgaagaaatatgcaaaggtttggtcatataaataaaagccttgtgtgttagtatttcttgcaccaatagttagtgggttt 7961866  T
Q  328 tgttatagctagcgttacctctactattcagtatctgtaattatc 372  Q
    || |||||||||| |||| |||||||||||  || ||||||||||    
T  7961867 tgctatagctagcattacttctactattcaaaatttgtaattatc 7961911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 226 - 377
Target Start/End: Original strand, 11269944 - 11270096
Alignment:
Q  226 aaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatggg 324  Q
    ||||||||||||||||||||||| ||||||||||  |||  ||| | ||||||||||||||  |||||| ||||||||   ||||||||| |||| ||||    
T  11269944 aaaatgtcccacatcggataatatgaagaaatataaaaaagtttggtcatataaataaaagccttgtgtgttagtattagttgcaccaatagttagtggg 11270043  T
Q  325 ttttgttatagctagcgttacctctactattcagtatctgtaattatcgatta 377  Q
    ||||| |||| |||| ||||||||||||||||||||| |||||||||| ||||    
T  11270044 ttttgctataactagtgttacctctactattcagtatttgtaattatcaatta 11270096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 210 - 393
Target Start/End: Complemental strand, 1716787 - 1716602
Alignment:
Q  210 ttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgc 308  Q
    ||||| ||||||||||||||  || ||||||| | |||| ||| ||||||| ||||| ||  ||||||||||||| || |||||| ||| |||||| |||    
T  1716787 ttgaaatagtgttggaaaaaattctcacatcgaagaatatgaaaaaatatgtaaagacttgaccatataaataaaggtcttgtgtgttaatatttcttgc 1716688  T
Q  309 accaatggttaatgggttttgttatagctagcgttacctctactattcagtatctgtaattatcgattatagt-gaattcttttca 393  Q
    | |||| |||| || ||||| |||||||| |  |||||||||||||||||||| | | || |||||||||||| ||||||||||||    
T  1716687 atcaatagttagtgagtttttttatagctggtattacctctactattcagtatatatgataatcgattatagtggaattcttttca 1716602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 210 - 286
Target Start/End: Original strand, 1103129 - 1103205
Alignment:
Q  210 ttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag 286  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||    
T  1103129 ttgaattagtgttggaaaaacgtcccacatcggataatatgaagaaatatgtaaagacttggccatataaataaaag 1103205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 290 - 372
Target Start/End: Original strand, 36207996 - 36208078
Alignment:
Q  290 gtgtattagtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattcagtatctgtaattatc 372  Q
    |||| |||||||||| ||||||||| |||| ||||||||| |||||||||||||| |||||||||| ||||||| ||||||||    
T  36207996 gtgtgttagtatttcttgcaccaatagttagtgggttttgctatagctagcgttagctctactatttagtatctctaattatc 36208078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 260
Target Start/End: Original strand, 1345068 - 1345129
Alignment:
Q  198 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatg 260  Q
    ||||||||||||||||||||||||| |||||| ||| ||||||| | |||| |||||||||||    
T  1345068 ttgaaatatgtcttgaattagtgttagaaaaa-gtctcacatcgaagaataagaagaaatatg 1345129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 1103078 - 1103127
Alignment:
Q  199 tgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataata 248  Q
    ||||||||| |||||||||||||||| |||||||| |||||| |||||||    
T  1103078 tgaaatatgccttgaattagtgttgggaaaatgtctcacatctgataata 1103127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 324 - 368
Target Start/End: Complemental strand, 11269846 - 11269802
Alignment:
Q  324 gttttgttatagctagcgttacctctactattcagtatctgtaat 368  Q
    |||||| ||||||||||||||||||||||| | ||||||||||||    
T  11269846 gttttgctatagctagcgttacctctactagttagtatctgtaat 11269802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 308 - 362
Target Start/End: Original strand, 11280342 - 11280396
Alignment:
Q  308 caccaatggttaatgggttttgttatagctagcgttacctctactattcagtatc 362  Q
    ||||||| |||| | ||||||| |||||||||||||||||||||||  |||||||    
T  11280342 caccaatagttagtaggttttgctatagctagcgttacctctactagacagtatc 11280396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 4e-31; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 229 - 357
Target Start/End: Complemental strand, 22827166 - 22827037
Alignment:
Q  229 atgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag-tttgtgtattagtatttcatgcaccaatggttaatgggttt 327  Q
    |||||||||||||||||||| |||||||||||||||| ||| | ||||||||||||||  |||||| ||  |||||| ||||||||| |||| |||||||    
T  22827166 atgtcccacatcggataatatgaagaaatatgcaaaggtttggtcatataaataaaagccttgtgtgttcatatttcttgcaccaatagttagtgggttt 22827067  T
Q  328 tgttatagctagcgttacctctactattca 357  Q
    ||||||||||||| |||| |||||||||||    
T  22827066 tgttatagctagcattacttctactattca 22827037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 229 - 357
Target Start/End: Original strand, 22840959 - 22841088
Alignment:
Q  229 atgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttt 327  Q
    |||||||||||||||||||| ||||||||||||||||  || | |||| |||||||||  |||||| |||||||||| ||||||||| |||| |||||||    
T  22840959 atgtcccacatcggataatatgaagaaatatgcaaaggcttggtcataaaaataaaagccttgtgtgttagtatttcttgcaccaatagttagtgggttt 22841058  T
Q  328 tgttatagctagcgttacctctactattca 357  Q
    |  |||||||||| |||| |||||||||||    
T  22841059 tactatagctagcattacttctactattca 22841088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 198 - 369
Target Start/End: Original strand, 24284782 - 24284954
Alignment:
Q  198 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag-tttgtgtatt 296  Q
    |||||||||| ||||||||| | |||| |||| |||||||||| || |||| ||| ||||||||||| |||| || ||||||||||| |  |||||| ||    
T  24284782 ttgaaatatgccttgaattaatattgggaaaaagtcccacatcagagaatatgaacaaatatgcaaatatttggctatataaataaaggcattgtgtgtt 24284881  T
Q  297 agtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattcagtatctgtaatt 369  Q
    | |||||| ||||||||| || | ||| | ||  ||||||| |  ||| |||||||||| |||||||||||||    
T  24284882 aatatttcttgcaccaatagtcagtggatgttactatagctggtattagctctactatttagtatctgtaatt 24284954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 288 - 368
Target Start/End: Complemental strand, 20261024 - 20260944
Alignment:
Q  288 ttgtgtattagtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattcagtatctgtaat 368  Q
    ||||||||||||||||| |||| |||| | |||||  ||||| |||| |||||||||||||||||||||||||| ||||||    
T  20261024 ttgtgtattagtatttcttgcatcaatagctaatgaattttgctataactagcgttacctctactattcagtatatgtaat 20260944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 198 - 337
Target Start/End: Original strand, 24272707 - 24272846
Alignment:
Q  198 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag-tttgtgtatt 296  Q
    ||||||||||||||||||||||||||||||||  || ||||||| | | || ||||||||||||||||| ||  | ||||| ||||| |  |||||| ||    
T  24272707 ttgaaatatgtcttgaattagtgttggaaaaa-atctcacatcgtagagtatgaagaaatatgcaaagacttgacaatatatataaaggccttgtgtgtt 24272805  T
Q  297 agtatttcatgcaccaatggttaatgggttttgttatagct 337  Q
    |||||||| ||||||||| |||| || |||||  |||||||    
T  24272806 agtatttcttgcaccaatagttagtgagttttactatagct 24272846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 273 - 357
Target Start/End: Complemental strand, 22826727 - 22826642
Alignment:
Q  273 catataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattca 357  Q
    ||||||||||||||  || ||| |||||||||| ||||||||| |||| ||| ||||| |||||||||| |||| |||||||||||    
T  22826727 catataaataaaagccttatgtgttagtatttcttgcaccaatagttagtggattttgctatagctagcattacttctactattca 22826642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 9e-29; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 611 - 748
Target Start/End: Complemental strand, 20289853 - 20289716
Alignment:
Q  611 aaggtctatgtacacctttgttaaatcctgcaccaaaccctatatttgctgatatcgccactctagagtagaagacacattctacgttgctccttgcttt 710  Q
    |||||||||| ||||||||| |||| ||| | ||| ||||| ||  ||||||| |||||||||||||| ||||  ||||||||| |||||||| ||||||    
T  20289853 aaggtctatggacacctttgataaagcctacgccataccctctacctgctgatttcgccactctagaggagaaagcacattctatgttgctccatgcttt 20289754  T
Q  711 ggaagatcatatcatcactaaggttgctgaagaggata 748  Q
    ||| ||||||||||||||| |||| |||||||||||||    
T  20289753 ggatgatcatatcatcactgaggtcgctgaagaggata 20289716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 226 - 361
Target Start/End: Original strand, 19670657 - 19670793
Alignment:
Q  226 aaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatggg 324  Q
    |||||||| |||||  ||||||| ||||||||||||||||  || | ||||||||||||||  |||||| |||||||| | || |||||| |||| ||||    
T  19670657 aaaatgtctcacataagataatatgaagaaatatgcaaaggcttagtcatataaataaaagccttgtgtgttagtattacttgtaccaatagttagtggg 19670756  T
Q  325 ttttgttatagctagcgttacctctactattcagtat 361  Q
    ||||| |||||||||||||||||||||||||||||||    
T  19670757 ttttgctatagctagcgttacctctactattcagtat 19670793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 226 - 354
Target Start/End: Complemental strand, 32795672 - 32795543
Alignment:
Q  226 aaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatggg 324  Q
    ||||||||||||||||||||||| ||||||||||||||||| || | ||||| ||||||||| ||| || | |||||| | || |||||| |||| ||||    
T  32795672 aaaatgtcccacatcggataatatgaagaaatatgcaaagacttagtcatattaataaaagtcttgcgtgtcagtattacttgtaccaatagttagtggg 32795573  T
Q  325 ttttgttatagctagcgttacctctactat 354  Q
    ||||| |||| ||| |||||||||||||||    
T  32795572 ttttgctataactaacgttacctctactat 32795543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 245 - 339
Target Start/End: Original strand, 26896586 - 26896681
Alignment:
Q  245 aatacgaagaaatatgcaaagattttgccatataaataaa-agtttgtgtattagtatttcatgcaccaatggttaatgggttttgttatagctag 339  Q
    |||| ||||||||||||||||| || |||||||||||||| |  |||||| |||||||||| ||||  ||| ||||||| |||||| |||||||||    
T  26896586 aataggaagaaatatgcaaagacttggccatataaataaagacattgtgtgttagtatttcttgcattaatagttaatgtgttttgctatagctag 26896681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 226 - 302
Target Start/End: Complemental strand, 32796436 - 32796359
Alignment:
Q  226 aaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag-tttgtgtattagtatt 302  Q
    ||||||||||| ||||||||||| ||||||||||||||||  || | ||||||||||||||  |||||| ||||||||    
T  32796436 aaaatgtcccagatcggataatatgaagaaatatgcaaaggcttagtcatataaataaaagccttgtgtgttagtatt 32796359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 8e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 211 - 335
Target Start/End: Original strand, 33897182 - 33897307
Alignment:
Q  211 tgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgca 309  Q
    |||||||||||||| ||||||||| | |||  |||||| ||||||||||| ||||||||  | |||||||||||||| |||||| |||||||||  | ||    
T  33897182 tgaattagtgttgggaaaatgtccaatatcatataataggaagaaatatgtaaagatttgacaatataaataaaagtcttgtgtgttagtattttttaca 33897281  T
Q  310 ccaatggttaatgggttttgttatag 335  Q
    |||||  ||| | |||||||||||||    
T  33897282 ccaataattagtaggttttgttatag 33897307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 276 - 357
Target Start/End: Original strand, 42001905 - 42001987
Alignment:
Q  276 ataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattca 357  Q
    |||||||||||| |||||| |||||| | | ||||||||| |||| | ||||||| ||||| |||| |||| |||||||||||    
T  42001905 ataaataaaagtcttgtgtgttagtaatacttgcaccaatagttagtaggttttgctataggtagcattacttctactattca 42001987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 260530 - 260473
Alignment:
Q  198 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaa 255  Q
    ||||||||||| ||||||||||||||| ||||||||| |||| || ||||||||||||    
T  260530 ttgaaatatgttttgaattagtgttgggaaaatgtcctacatagggtaatacgaagaa 260473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University