View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4296_low_13 (Length: 261)
Name: NF4296_low_13
Description: NF4296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4296_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 99; Significance: 6e-49; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 11453141 - 11453255
Alignment:
| Q |
18 |
tcctttgttgatgactttggtgatgactttggtgatgaagctggggcttcagcggccatagcgacgccaacaatggcaacaaagatgagcgcgagaacaa |
117 |
Q |
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| T |
11453141 |
tcctttgctgatgactttggtgatgactttggtgatgaagctggggcttcagcggccatagcgacgccaacaacggcaacaaagatgagcgcgagaacga |
11453240 |
T |
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| Q |
118 |
atacctttgaagcca |
132 |
Q |
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| T |
11453241 |
ataccttagaagcca |
11453255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 38 - 132
Target Start/End: Original strand, 11380927 - 11381021
Alignment:
| Q |
38 |
tgatgactttggtgatgaagctggggcttcagcggccatagcgacgccaacaatggcaacaaagatgagcgcgagaacaaatacctttgaagcca |
132 |
Q |
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| T |
11380927 |
tgatgcctttggtgatgaagctggggcttcagcggccatagccacgccaacaatgacaacaaagatgagcgcgagaacgaatacctttgaagcca |
11381021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 38 - 132
Target Start/End: Original strand, 11396305 - 11396399
Alignment:
| Q |
38 |
tgatgactttggtgatgaagctggggcttcagcggccatagcgacgccaacaatggcaacaaagatgagcgcgagaacaaatacctttgaagcca |
132 |
Q |
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| T |
11396305 |
tgatgcctttggtgatgaagttggggcttcagcggccatagccacgccaacaatggcaacaaagatgagcgcgagaacgaatacctttgaagcca |
11396399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 38 - 132
Target Start/End: Original strand, 11404327 - 11404421
Alignment:
| Q |
38 |
tgatgactttggtgatgaagctggggcttcagcggccatagcgacgccaacaatggcaacaaagatgagcgcgagaacaaatacctttgaagcca |
132 |
Q |
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| T |
11404327 |
tgatgcctttggtgatgaagttggggcttcagcggccatagccacgccaacaatggcaacaaagatgagcgcgagaacgaatacctttgaagcca |
11404421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 174 - 243
Target Start/End: Original strand, 11381061 - 11381130
Alignment:
| Q |
174 |
agtatttctctaataaaacaatattagagaaaatacgaacaagaatgaatgtggtgaattggtttgagtg |
243 |
Q |
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| T |
11381061 |
agtatttctctaataaaacaatattagagaaaatactaacaagaatgaatgtggtgaattggtttgagtg |
11381130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 174 - 243
Target Start/End: Original strand, 11396439 - 11396508
Alignment:
| Q |
174 |
agtatttctctaataaaacaatattagagaaaatacgaacaagaatgaatgtggtgaattggtttgagtg |
243 |
Q |
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| T |
11396439 |
agtatttctctaataaaacaatattagagaaaatactaacaagaatgaatgtggtgaattggtttgagtg |
11396508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 174 - 243
Target Start/End: Original strand, 11404461 - 11404530
Alignment:
| Q |
174 |
agtatttctctaataaaacaatattagagaaaatacgaacaagaatgaatgtggtgaattggtttgagtg |
243 |
Q |
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| T |
11404461 |
agtatttctctaataaaacaatattagagaaaatactaacaagaatgaatgtggtgaattggtttgagtg |
11404530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 11453296 - 11453360
Alignment:
| Q |
178 |
tttctctaataaaacaatattagagaaaatacgaacaagaatgaatgtggtgaattggtttgagt |
242 |
Q |
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| T |
11453296 |
tttctctaatgaaacaatattagagaaaatactaacaagaatgaatgtggtgaattggtttgagt |
11453360 |
T |
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