View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4296_low_14 (Length: 254)
Name: NF4296_low_14
Description: NF4296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4296_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 18028123 - 18028318
Alignment:
| Q |
1 |
attttaaccatgatctcttccaaatacctcaaatgaactcaatcatatgttttctcaaaatcaactttaaaaagaattaattctttctttagcctccaag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
18028123 |
attttaaccatgatctcttccaaatacctcaaatgaactcaatcatatgctttctcaaaatcaactttaaaaagaattaattctttctttagcatccgag |
18028222 |
T |
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| Q |
101 |
catccaccactaattcattggcaataagaatatcatcaggaatttgtatacctttaacaaaacagagtgaaactccaccactacattaccaacaac |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18028223 |
catccaccactaattcattggcaataagaatatcatcaggaatttgtctacctttaacaaaacagagtgaaactccaccactacattaccaacaac |
18028318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 235
Target Start/End: Original strand, 18029767 - 18029795
Alignment:
| Q |
207 |
atccttatttacctatttattacaattct |
235 |
Q |
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| T |
18029767 |
atccttatttacctatttattacaattct |
18029795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 15222767 - 15222700
Alignment:
| Q |
52 |
ttctcaaaatcaactttaaaaagaattaattctttctttagcctccaagcatccaccactaattcatt |
119 |
Q |
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| T |
15222767 |
ttctcaaaatcaatcttaaaaagaattaattctttcttcaacctacaagcatcatccactaactcatt |
15222700 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 24491273 - 24491325
Alignment:
| Q |
13 |
atctcttccaaatacctcaaatgaactcaatcatatgttttctcaaaatcaac |
65 |
Q |
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| T |
24491273 |
atctcttccaagtacctcaaatataccgaatcatatgttttctcaaaatcaac |
24491325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 145
Target Start/End: Complemental strand, 16407078 - 16406974
Alignment:
| Q |
41 |
aatcatatgttttctcaaaatcaactttaaaaagaattaattctttctttagcctccaagcatccaccactaattcattggcaataagaatatcatcagg |
140 |
Q |
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||||||||| |||| |||||||||| || ||||| | ||| | |||||||||| | || ||||| |||| | ||||| |||||||||||| ||||| | |
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| T |
16407078 |
aatcatatgctttcccaaaatcaacattgaaaagtaataaatttttctttagcttacatgcatcatccacaatctcatttgcaataagaataccatcaag |
16406979 |
T |
|
| Q |
141 |
aattt |
145 |
Q |
| |
|
||||| |
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|
| T |
16406978 |
aattt |
16406974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 86
Target Start/End: Complemental strand, 36563072 - 36563037
Alignment:
| Q |
51 |
tttctcaaaatcaactttaaaaagaattaattcttt |
86 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||| |
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|
| T |
36563072 |
tttctcaaaatcaattttaaaaagaattaattcttt |
36563037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 22623534 - 22623596
Alignment:
| Q |
16 |
tcttccaaatacctcaaatgaactcaatcatatgttttctcaaaatcaactttaaaaagaatt |
78 |
Q |
| |
|
|||| ||||||| |||| | ||| ||||||| |||||||||||||| ||||||||||||||| |
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|
| T |
22623534 |
tctttcaaatacatcaagtcaaccgaatcataagttttctcaaaatcgactttaaaaagaatt |
22623596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 13534157 - 13534226
Alignment:
| Q |
20 |
ccaaatacctcaaatgaactcaatcatatgttttctcaaaatcaactttaaaaagaattaattctttctt |
89 |
Q |
| |
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||||||||||| |||||||| | ||||| ||||| | |||||||| ||||||||||| | ||||||||| |
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|
| T |
13534157 |
ccaaatacctccaatgaactgagtcataggtttttttgaaatcaaccttaaaaagaataagttctttctt |
13534226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 223736 - 223704
Alignment:
| Q |
41 |
aatcatatgttttctcaaaatcaactttaaaaa |
73 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
223736 |
aatcaaatgttttctcaaaatcaactttaaaaa |
223704 |
T |
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