View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4296_low_15 (Length: 254)
Name: NF4296_low_15
Description: NF4296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4296_low_15 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 35 - 214
Target Start/End: Original strand, 7424659 - 7424839
Alignment:
| Q |
35 |
ccaactaaattggtagaggaagtgaaggtgctctcatggaggtggaaggtacatcggctgaaaacgcctacttgtatgttttatgaatggtgttgggatc |
134 |
Q |
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| T |
7424659 |
ccaactaaattggtagaggaagtgaaggtgctctcatggaggtggaaggtacatcggctgaaaacgcctacttttatgttttatgaatggtgttgggatc |
7424758 |
T |
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| Q |
135 |
cgggagaatgcctcaggagaaagccggcctgaggggtttgaa-ggggagcaggttttggttgttagatatggtgtttggtt |
214 |
Q |
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| T |
7424759 |
cgggagaatgcctcaagagaaagccggcctgaggggtttgaagggggagcaggttttggttgttagatatggtgtttggtt |
7424839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 217
Target Start/End: Original strand, 7424833 - 7424862
Alignment:
| Q |
188 |
tttggttgttagatatggtgtttggttata |
217 |
Q |
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| T |
7424833 |
tttggttgttagatatggtgtttggttata |
7424862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 243
Target Start/End: Original strand, 7424879 - 7424907
Alignment:
| Q |
215 |
ataaatatggctttttggttgtggtctgt |
243 |
Q |
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| T |
7424879 |
ataaatatggctttttggttgtggtctgt |
7424907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 243264 - 243167
Alignment:
| Q |
42 |
aattggtagaggaagtgaaggtgctctcatggaggtggaaggtacatcggctgaaaacgcctacttgtatgttttatgaatggtgttgggatccggga |
139 |
Q |
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| T |
243264 |
aattggtagaggaagtgaacgttctctcttggacttggaatctacatcggctgaaaacatcttcatgtatgttctaagaatggttttgggatccggga |
243167 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 24356254 - 24356309
Alignment:
| Q |
161 |
gcctgaggggtttgaagggg-agcaggttttggttgttagatatggtgtttggttata |
217 |
Q |
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| T |
24356254 |
gcctaaggggtttgaagggggagcaggttttggttgtt--atatggtgtttggttata |
24356309 |
T |
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