View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4296_low_16 (Length: 251)

Name: NF4296_low_16
Description: NF4296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4296_low_16
NF4296_low_16
[»] chr7 (2 HSPs)
chr7 (21-169)||(11453682-11453819)
chr7 (164-243)||(11454081-11454161)


Alignment Details
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 169
Target Start/End: Original strand, 11453682 - 11453819
Alignment:
Q  21 tgatcggtagacactttcataaaatggattattaatattaatgggataattataaa-gcaacgccaattctaatataaaaactaataacatgttaaatag 119  Q
    ||||||||||| ||||  |||||||||||||||||||||| ||||||||||||||| |||| || |||||| |||||||| |||||||                
T  11453682 tgatcggtagatacttctataaaatggattattaatattactgggataattataaaagcaaggctaattctcatataaaagctaataaa----------- 11453770  T
Q  120 tcatgtgttaaatggactatgatctcaacgttatttcatgtaggttccaa 169  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11453771 -catgtgttaaatggactatgatctcaacgttatttcatgtaggttccaa 11453819  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 11454081 - 11454161
Alignment:
Q  164 ttccaacttaaggcannnnnnnaaaaaattaccattaatcatgcaatttgattcaac-cacaaaccatctcaacctatgct 243  Q
    |||||||||||||||       ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11454081 ttccaacttaaggcatttttaaaaaaaattaccattaatcatgcaatttgattcaacacacaaaccatctcaacctatgct 11454161  T

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