View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4296_low_17 (Length: 250)

Name: NF4296_low_17
Description: NF4296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4296_low_17
NF4296_low_17
[»] chr4 (10 HSPs)
chr4 (126-242)||(11121550-11121666)
chr4 (126-242)||(4895939-4896052)
chr4 (126-242)||(38742998-38743115)
chr4 (1-64)||(38743256-38743319)
chr4 (1-65)||(3252892-3252956)
chr4 (4-64)||(11121325-11121384)
chr4 (19-64)||(40957497-40957542)
chr4 (1-64)||(4921301-4921364)
chr4 (1-64)||(27295026-27295089)
chr4 (1-52)||(13860768-13860819)
[»] chr1 (10 HSPs)
chr1 (126-234)||(16166378-16166487)
chr1 (126-234)||(16167363-16167472)
chr1 (1-64)||(7846792-7846855)
chr1 (1-64)||(16167622-16167685)
chr1 (1-64)||(16166638-16166701)
chr1 (127-233)||(7846612-7846718)
chr1 (133-224)||(18146826-18146918)
chr1 (1-64)||(27288532-27288595)
chr1 (1-64)||(52383916-52383979)
chr1 (1-49)||(34609796-34609844)
[»] chr5 (8 HSPs)
chr5 (126-234)||(36245450-36245559)
chr5 (1-63)||(36245726-36245788)
chr5 (133-216)||(5248538-5248622)
chr5 (133-216)||(15387703-15387787)
chr5 (1-64)||(5806268-5806331)
chr5 (1-64)||(15387457-15387520)
chr5 (157-218)||(5806528-5806590)
chr5 (1-49)||(40415490-40415538)
[»] chr3 (5 HSPs)
chr3 (1-63)||(29557126-29557188)
chr3 (135-228)||(26281941-26282033)
chr3 (160-228)||(29557366-29557432)
chr3 (1-52)||(25703578-25703629)
chr3 (1-64)||(50648312-50648375)
[»] chr8 (5 HSPs)
chr8 (130-242)||(13586680-13586793)
chr8 (1-64)||(13586948-13587010)
chr8 (135-242)||(40940071-40940177)
chr8 (1-65)||(5423943-5424007)
chr8 (1-64)||(40940340-40940403)
[»] chr2 (4 HSPs)
chr2 (1-64)||(25853593-25853656)
chr2 (1-64)||(14100607-14100670)
chr2 (159-224)||(33471916-33471982)
chr2 (1-64)||(33472236-33472299)
[»] chr7 (6 HSPs)
chr7 (155-224)||(20417476-20417546)
chr7 (1-62)||(20420749-20420810)
chr7 (1-53)||(17076436-17076488)
chr7 (1-64)||(29831609-29831672)
chr7 (1-64)||(19464184-19464247)
chr7 (1-64)||(20417290-20417352)
[»] scaffold0685 (1 HSPs)
scaffold0685 (1-64)||(7929-7992)


Alignment Details
Target: chr4 (Bit Score: 97; Significance: 9e-48; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 126 - 242
Target Start/End: Original strand, 11121550 - 11121666
Alignment:
Q  126 taatcaccataatcacatattttaagaataaatcgaaactcaaaccttcttttgatctaagctttattttcttcaggtttgacaaacacctatactattg 225  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  11121550 taatcaccataatcacatattttaagaagaaaccgaaactcaaaccttcttttgatctaagctttattttcttcgggtttgacaaacatctatactattg 11121649  T
Q  226 ttttttctacctatgct 242  Q
    ||| |||||||||||||    
T  11121650 tttcttctacctatgct 11121666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 126 - 242
Target Start/End: Complemental strand, 4896052 - 4895939
Alignment:
Q  126 taatcaccataatcacatattttaagaataaatcgaaactcaaaccttcttttgatctaagctttattttcttcaggtttgacaaacacctatactattg 225  Q
    ||||||||||||||||||||||| || | ||| ||||||||||||||||||||||||||||||   |||||||   ||||||||||||| ||||||||||    
T  4896052 taatcaccataatcacatattttgagcagaaaccgaaactcaaaccttcttttgatctaagct---ttttctttctgtttgacaaacacatatactattg 4895956  T
Q  226 ttttttctacctatgct 242  Q
    ||| |||||| ||||||    
T  4895955 tttcttctacttatgct 4895939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 126 - 242
Target Start/End: Complemental strand, 38743115 - 38742998
Alignment:
Q  126 taatcaccataatcacatattttaagaataaatcgaaactcaaaccttcttttgatctaagctttat-tttcttcaggtttgacaaacacctatactatt 224  Q
    |||||| |||||||||||||||| || | |||  |||||||||||||||||||||| | | |||| | |||||||| |||||||||||||||||||||||    
T  38743115 taatcatcataatcacatattttgagcagaaactgaaactcaaaccttcttttgatgtgaactttttctttcttcaagtttgacaaacacctatactatt 38743016  T
Q  225 gttttttctacctatgct 242  Q
    |||| |||||| ||||||    
T  38743015 gtttcttctacttatgct 38742998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 38743319 - 38743256
Alignment:
Q  1 taatattttatgtagccaaaatatctcaacatactatatataatactttcaatactatccatta 64  Q
    |||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||    
T  38743319 taatattttatgtagctaaaatatctcaacaaactatacataatactttcaatactatccatta 38743256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 3252956 - 3252892
Alignment:
Q  1 taatattttatgtagccaaaatatctcaacatactatatataatactttcaatactatccattat 65  Q
    ||||||||||||||||  ||||||||||||| ||||||||||||||||||||| |||||||||||    
T  3252956 taatattttatgtagcgtaaatatctcaacaaactatatataatactttcaatcctatccattat 3252892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 11121325 - 11121384
Alignment:
Q  4 tattttatgtagccaaaatatctcaacatactatatataatactttcaatactatccatta 64  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  11121325 tattttatgtagccaaaatatctcaacataatatatataatac-ttcaatactatccatta 11121384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 40957542 - 40957497
Alignment:
Q  19 aaatatctcaacatactatatataatactttcaatactatccatta 64  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||    
T  40957542 aaatatctcaacaaactatatataatactttcaatcctatccatta 40957497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 4921301 - 4921364
Alignment:
Q  1 taatattttatgtagccaaaatatctcaacatactatatataatactttcaatactatccatta 64  Q
    |||||||||||||||   ||||||||||||| ||||||| |||||||||| || ||||||||||    
T  4921301 taatattttatgtagagtaaatatctcaacaaactatatgtaatactttctatcctatccatta 4921364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 27295026 - 27295089
Alignment:
Q  1 taatattttatgtagccaaaatatctcaacatactatatataatactttcaatactatccatta 64  Q
    |||||||||||||||   ||||||||||||| ||||||| ||||||||||||| |||| |||||    
T  27295026 taatattttatgtagagtaaatatctcaacaaactatatgtaatactttcaatcctatacatta 27295089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 13860768 - 13860819
Alignment:
Q  1 taatattttatgtagccaaaatatctcaacatactatatataatactttcaa 52  Q
    ||||||||||||| ||  ||||||||||||| |||| |||||||||||||||    
T  13860768 taatattttatgttgcagaaatatctcaacaaactacatataatactttcaa 13860819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 126 - 234
Target Start/End: Complemental strand, 16166487 - 16166378
Alignment:
Q  126 taatcaccataatcacatattttaagaataaatcgaaactcaaaccttcttttgatctaagctttat-tttcttcaggtttgacaaacacctatactatt 224  Q
    ||||||||||||||||||||||| || | |||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||    
T  16166487 taatcaccataatcacatattttgagcagaaatcgaaactcaaaccttcttttaatctaagctttttctttcttcaggtttgacaaacacctatactatt 16166388  T
Q  225 gttttttcta 234  Q
     ||| |||||    
T  16166387 atttcttcta 16166378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 126 - 234
Target Start/End: Complemental strand, 16167472 - 16167363
Alignment:
Q  126 taatcaccataatcacatattttaagaataaatcgaaactcaaaccttcttttgatctaagctttat-tttcttcaggtttgacaaacacctatactatt 224  Q
    ||||||||||||||||||||||| || | ||| |||||||||||||||||||||||||||||||| | ||||| ||||| ||||||||||||||||||||    
T  16167472 taatcaccataatcacatattttgagcagaaaccgaaactcaaaccttcttttgatctaagctttttctttctgcaggtctgacaaacacctatactatt 16167373  T
Q  225 gttttttcta 234  Q
     ||| |||||    
T  16167372 atttcttcta 16167363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 7846855 - 7846792
Alignment:
Q  1 taatattttatgtagccaaaatatctcaacatactatatataatactttcaatactatccatta 64  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7846855 taatattttatgtagccaaaatatctcaacaaactatatataatactttcaatactatccatta 7846792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 16167685 - 16167622
Alignment:
Q  1 taatattttatgtagccaaaatatctcaacatactatatataatactttcaatactatccatta 64  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  16167685 taatattttatgtagccaaaatatctcaacaaactatatctaatactttcaatactatccatta 16167622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 16166701 - 16166638
Alignment:
Q  1 taatattttatgtagccaaaatatctcaacatactatatataatactttcaatactatccatta 64  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||    
T  16166701 taatattttatgtagccaaaatatctcaacaaactatatatcatactttcaatactatctatta 16166638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 233
Target Start/End: Complemental strand, 7846718 - 7846612
Alignment:
Q  127 aatcaccataatcacatattttaagaataaatcgaaactcaaaccttcttttgatctaagctttat-tttcttcaggtttgacaaacacctatactattg 225  Q
    |||||||| ||||||||||||| || | ||| | ||||||||||||| | || ||||||||||| | ||||||||||||||||||||||||||||||||     
T  7846718 aatcaccacaatcacatattttgagcagaaacctaaactcaaacctt-tattaatctaagctttttctttcttcaggtttgacaaacacctatactatta 7846620  T
Q  226 ttttttct 233  Q
    ||| ||||    
T  7846619 tttcttct 7846612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 224
Target Start/End: Original strand, 18146826 - 18146918
Alignment:
Q  133 cataatcacatattttaagaataaatcgaaactcaaaccttcttttgatctaagctttat-tttcttcaggtttgacaaacacctatactatt 224  Q
    |||||||| ||||||  || | ||| ||||||||||||||||||||||||||| |||| | ||| ||||||||| |||||||||||| |||||    
T  18146826 cataatcatatatttggagcacaaaccgaaactcaaaccttcttttgatctaaactttttctttgttcaggtttaacaaacacctattctatt 18146918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 27288532 - 27288595
Alignment:
Q  1 taatattttatgtagccaaaatatctcaacatactatatataatactttcaatactatccatta 64  Q
    |||||||||||||||   ||||||||||||| ||||||| ||||||||||||| ||||||||||    
T  27288532 taatattttatgtagagtaaatatctcaacaaactatatgtaatactttcaatcctatccatta 27288595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 52383979 - 52383916
Alignment:
Q  1 taatattttatgtagccaaaatatctcaacatactatatataatactttcaatactatccatta 64  Q
    ||||||||||||||    ||||||||||||| ||||||| ||||||||||||| |||| |||||    
T  52383979 taatattttatgtaaagtaaatatctcaacaaactatatgtaatactttcaatcctatacatta 52383916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 34609844 - 34609796
Alignment:
Q  1 taatattttatgtagccaaaatatctcaacatactatatataatacttt 49  Q
    |||||||||| |||||  ||||||||||||  |||||||||||||||||    
T  34609844 taatattttacgtagcgtaaatatctcaacgaactatatataatacttt 34609796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 126 - 234
Target Start/End: Complemental strand, 36245559 - 36245450
Alignment:
Q  126 taatcaccataatcacatattttaagaataaatcgaaactcaaaccttcttttgatctaagctttat-tttcttcaggtttgacaaacacctatactatt 224  Q
    ||||||||||||||||||||||| || | ||||||||| ||||||||| |||||||||||||||| | |||||||| |||||||||||||||||||||||    
T  36245559 taatcaccataatcacatattttgagcaaaaatcgaaagtcaaaccttattttgatctaagctttttctttcttcaagtttgacaaacacctatactatt 36245460  T
Q  225 gttttttcta 234  Q
     ||| |||||    
T  36245459 atttcttcta 36245450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 36245788 - 36245726
Alignment:
Q  1 taatattttatgtagccaaaatatctcaacatactatatataatactttcaatactatccatt 63  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  36245788 taatattttatgtagccaaaatatctcaacaaactatatataataccttcaatactatccatt 36245726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 216
Target Start/End: Original strand, 5248538 - 5248622
Alignment:
Q  133 cataatcacatattttaagaataaatcgaaactcaaaccttcttttgatctaagctttat-tttcttcaggtttgacaaacacct 216  Q
    |||||| ||||||||| || | ||| ||||| ||||||||||||||||| |||||||| | ||||||||||||||||||||||||    
T  5248538 cataataacatattttgagcaaaaaccgaaattcaaaccttcttttgatttaagctttttctttcttcaggtttgacaaacacct 5248622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 216
Target Start/End: Original strand, 15387703 - 15387787
Alignment:
Q  133 cataatcacatattttaagaataaatcgaaactcaaaccttcttttgatctaagctttat-tttcttcaggtttgacaaacacct 216  Q
    |||||||||||||||  || | ||| ||||||||||||||||||||||||||| |||| | ||| ||||||||| ||||||||||    
T  15387703 cataatcacatatttggagcacaaaccgaaactcaaaccttcttttgatctaaactttttctttgttcaggtttaacaaacacct 15387787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 5806268 - 5806331
Alignment:
Q  1 taatattttatgtagccaaaatatctcaacatactatatataatactttcaatactatccatta 64  Q
    |||||||||||||| |  ||||||||||||| ||||||||||||| ||||||||||||| ||||    
T  5806268 taatattttatgtaacagaaatatctcaacaaactatatataatattttcaatactatcaatta 5806331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 15387457 - 15387520
Alignment:
Q  1 taatattttatgtagccaaaatatctcaacatactatatataatactttcaatactatccatta 64  Q
    |||||||||||||| |  ||||||||||||| |||| |||||||| ||||||||||||||||||    
T  15387457 taatattttatgtaacagaaatatctcaacaaactacatataatattttcaatactatccatta 15387520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 5806528 - 5806590
Alignment:
Q  157 atcgaaactcaaaccttcttttgatctaagctttat-tttcttcaggtttgacaaacacctat 218  Q
    |||||||||||||||||||||||||||||  ||| | ||| ||||||||| ||||||| ||||    
T  5806528 atcgaaactcaaaccttcttttgatctaaattttttctttgttcaggtttaacaaacatctat 5806590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 40415490 - 40415538
Alignment:
Q  1 taatattttatgtagccaaaatatctcaacatactatatataatacttt 49  Q
    ||||||||||||||||  ||||||||||||| ||||  |||||||||||    
T  40415490 taatattttatgtagcataaatatctcaacaaactacgtataatacttt 40415538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 29557126 - 29557188
Alignment:
Q  1 taatattttatgtagccaaaatatctcaacatactatatataatactttcaatactatccatt 63  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  29557126 taatattttatgtagccaaaacatctcaacaaactatatataatactttcaatactatccatt 29557188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 135 - 228
Target Start/End: Complemental strand, 26282033 - 26281941
Alignment:
Q  135 taatcacatattttaagaataaatcgaaactcaaaccttcttttgatctaagctttat-tttcttcaggtttgacaaacacctatactattgttt 228  Q
    |||||| |||||||||| | |||||||||||| |||||||||   ||||||||||| | |||||||||||||||||||||| |||| ||||||||    
T  26282033 taatcatatattttaagcagaaatcgaaactctaaccttcttc--atctaagctttttctttcttcaggtttgacaaacacttatattattgttt 26281941  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 29557366 - 29557432
Alignment:
Q  160 gaaactcaaaccttcttttgatctaagctttattttcttcaggtttgacaaacacctatactattgttt 228  Q
    |||||||||||||||||  |||||||| |||  ||||||||||||||||||||| ||||||||||||||    
T  29557366 gaaactcaaaccttctt--gatctaagtttttctttcttcaggtttgacaaacatctatactattgttt 29557432  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 25703629 - 25703578
Alignment:
Q  1 taatattttatgtagccaaaatatctcaacatactatatataatactttcaa 52  Q
    ||||||||||||||||  |||||| |||||| |||||| |||||||||||||    
T  25703629 taatattttatgtagcagaaatatttcaacaaactatacataatactttcaa 25703578  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 50648375 - 50648312
Alignment:
Q  1 taatattttatgtagccaaaatatctcaacatactatatataatactttcaatactatccatta 64  Q
    |||||||||||||||   ||||||| ||||| ||||||| |||||||||||||  |||||||||    
T  50648375 taatattttatgtagagtaaatatcccaacaaactatatgtaatactttcaatcttatccatta 50648312  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 242
Target Start/End: Complemental strand, 13586793 - 13586680
Alignment:
Q  130 caccataatcacatattttaagaataaatcgaaactcaaaccttcttttgatctaagctttat-tttcttcaggtttgacaaacacctatactattgttt 228  Q
    ||||||||||||||||||| || | |||   |||||||||||||||||||||||||| ||| | ||||||   |||||||||||||||||| ||||||||    
T  13586793 caccataatcacatattttgagcagaaactaaaactcaaaccttcttttgatctaagttttttctttcttagagtttgacaaacacctatattattgttt 13586694  T
Q  229 tttctacctatgct 242  Q
     |||||| ||||||    
T  13586693 cttctacttatgct 13586680  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 13587010 - 13586948
Alignment:
Q  1 taatattttatgtagccaaaatatctcaacatactatatataatactttcaatactatccatta 64  Q
    |||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||    
T  13587010 taatattttatgta-ccaaaataactcaccatactatatataatactttcaatactatccatta 13586948  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 135 - 242
Target Start/End: Complemental strand, 40940177 - 40940071
Alignment:
Q  135 taatcacatattttaagaataaatcgaaactcaaaccttcttttgatctaagctttat-tttcttcaggtttgacaaacacctatactattgttttttct 233  Q
    |||||||||||||| || | ||| ||||||||||||||||||  |||||||||||| | ||||||| | |||||||||||||| ||||||||||| || |    
T  40940177 taatcacatattttgagcagaaagcgaaactcaaaccttctt--gatctaagctttttctttcttcggttttgacaaacacctctactattgtttctttt 40940080  T
Q  234 acctatgct 242  Q
    || ||||||    
T  40940079 acttatgct 40940071  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 5423943 - 5424007
Alignment:
Q  1 taatattttatgtagccaaaatatctcaacatactatatataatactttcaatactatccattat 65  Q
    ||||||||||||||    ||||||||||||| ||||||||||||||||||||| |||||||||||    
T  5423943 taatattttatgtaaagtaaatatctcaacaaactatatataatactttcaatcctatccattat 5424007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 40940403 - 40940340
Alignment:
Q  1 taatattttatgtagccaaaatatctcaacatactatatataatactttcaatactatccatta 64  Q
    |||||| ||||  |||||||||||||||||| ||||||||||||||| || |||||||||||||    
T  40940403 taatatattattcagccaaaatatctcaacaaactatatataatactctccatactatccatta 40940340  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 25853656 - 25853593
Alignment:
Q  1 taatattttatgtagccaaaatatctcaacatactatatataatactttcaatactatccatta 64  Q
    ||||||||||||||||  ||||||||||||| |||||||||||||||||||||  |||||||||    
T  25853656 taatattttatgtagcgtaaatatctcaacaaactatatataatactttcaatcatatccatta 25853593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 14100607 - 14100670
Alignment:
Q  1 taatattttatgtagccaaaatatctcaacatactatatataatactttcaatactatccatta 64  Q
    |||||||||||||||   ||||||||||||| ||||||| ||||||||||||| ||||||||||    
T  14100607 taatattttatgtagagtaaatatctcaacaaactatatgtaatactttcaatcctatccatta 14100670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 224
Target Start/End: Complemental strand, 33471982 - 33471916
Alignment:
Q  159 cgaaactcaaaccttcttttgatctaagctttat-tttcttcaggtttgacaaacacctatactatt 224  Q
    ||||||||||||||||||||||||| | |||| | ||| ||||||||| |||||||||||| |||||    
T  33471982 cgaaactcaaaccttcttttgatctgaactttttctttgttcaggtttaacaaacacctattctatt 33471916  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 33472299 - 33472236
Alignment:
Q  1 taatattttatgtagccaaaatatctcaacatactatatataatactttcaatactatccatta 64  Q
    |||||||||||||| |  ||||||||||||| | ||  ||||||| ||||||||||||||||||    
T  33472299 taatattttatgtaacagaaatatctcaacaaattacgtataatattttcaatactatccatta 33472236  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 20417476 - 20417546
Alignment:
Q  155 aaatcgaaactcaaaccttcttttgatctaagctttat-tttcttcaggtttgacaaacacctatactatt 224  Q
    ||||||||||||||||||||||||||||||| |||| | ||| ||||||||| |||||||||||| |||||    
T  20417476 aaatcgaaactcaaaccttcttttgatctaaactttttctttgttcaggtttaacaaacacctattctatt 20417546  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 20420749 - 20420810
Alignment:
Q  1 taatattttatgtagccaaaatatctcaacatactatatataatactttcaatactatccat 62  Q
    ||||||| ||||| || |||||||||||||| ||||  ||||||||||||||||||||||||    
T  20420749 taatattgtatgtggcaaaaatatctcaacaaactacctataatactttcaatactatccat 20420810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 17076488 - 17076436
Alignment:
Q  1 taatattttatgtagccaaaatatctcaacatactatatataatactttcaat 53  Q
    ||||||||||||||||  ||||||||||||| |||| ||||||||||||||||    
T  17076488 taatattttatgtagcagaaatatctcaacaaactacatataatactttcaat 17076436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 29831672 - 29831609
Alignment:
Q  1 taatattttatgtagccaaaatatctcaacatactatatataatactttcaatactatccatta 64  Q
    |||||||||||||||   ||||||||||| | ||||||| ||||||||||||| ||||||||||    
T  29831672 taatattttatgtagagtaaatatctcaaaaaactatatgtaatactttcaatcctatccatta 29831609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 19464184 - 19464247
Alignment:
Q  1 taatattttatgtagccaaaatatctcaacatactatatataatactttcaatactatccatta 64  Q
    |||||||||||||||   ||||||||||| | ||||||| ||||||||||||| |||| |||||    
T  19464184 taatattttatgtagagtaaatatctcaaaaaactatatgtaatactttcaatcctatacatta 19464247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 20417290 - 20417352
Alignment:
Q  1 taatattttatgtagccaaaatatctcaacatactatatataatactttcaatactatccatta 64  Q
    |||||||||||||| |  |||||||| |||| |||| |||||||| ||||||||||||||||||    
T  20417290 taatattttatgtaacagaaatatct-aacaaactacatataatattttcaatactatccatta 20417352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0685 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0685
Description:

Target: scaffold0685; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 7992 - 7929
Alignment:
Q  1 taatattttatgtagccaaaatatctcaacatactatatataatactttcaatactatccatta 64  Q
    ||||||||||||||    ||||||||||||| ||||||| ||||||||||||| |||| |||||    
T  7992 taatattttatgtatagtaaatatctcaacaaactatatgtaatactttcaatcctatacatta 7929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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