View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4296_low_19 (Length: 245)
Name: NF4296_low_19
Description: NF4296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4296_low_19 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 245
Target Start/End: Original strand, 12703039 - 12703277
Alignment:
| Q |
10 |
catcatcaactgttttatttgctgctaaagcatcaacaggaaccaaattctgcaatggtttgcaaactttggaagcagaatttctatgaagctg---att |
106 |
Q |
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| T |
12703039 |
catcatcaactgttttatttgcttctagagcatcaactggaaccaaattctgcaatggtttgcaaactttggaagcagaatttctatgaagctgctgatt |
12703138 |
T |
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| Q |
107 |
gggggtctcaactttcgtgagcggacgatcaattcttctagtttcttgagtgagtgaatctccaattccaacacttgttgaacaagacccaaattgaaat |
206 |
Q |
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| T |
12703139 |
gggggtctcaactttcgtgagcggacgatcaattcttctagtttcttgagtgagtgaatctccaattccaacacttgttgaacaagacccaaattgaaat |
12703238 |
T |
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| Q |
207 |
ccttgtttggatttctcaggttcgctatgtttcatcaat |
245 |
Q |
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| T |
12703239 |
ccttgtttggatttctcaggttcgctatgtttcgtcaat |
12703277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 245
Target Start/End: Original strand, 8207045 - 8207164
Alignment:
| Q |
126 |
agcggacgatcaattcttctagtttcttgagtgagtgaatctccaattccaacacttgttgaacaagacccaaattgaaatccttgtttggatttctcag |
225 |
Q |
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| T |
8207045 |
agcggacgatcaattctgctagtatctcgaggaagcgaatctgctactctaacacttcttgaacaagaccccaattgacatacttgtttggattcctcag |
8207144 |
T |
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| Q |
226 |
gttcgctatgtttcatcaat |
245 |
Q |
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| T |
8207145 |
gttcacgatgtttcctcaat |
8207164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 122
Target Start/End: Original strand, 8206849 - 8206942
Alignment:
| Q |
29 |
tgctgctaaagcatcaacaggaaccaaattctgcaatggtttgcaaactttggaagcagaatttctatgaagctgattgggggtctcaactttc |
122 |
Q |
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| T |
8206849 |
tgctgctacagcatcaacaggaaccacattcggcaatggtttacaaactttgggagcagatttcccatggtgctgacttggggtctcagctttc |
8206942 |
T |
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