View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4296_low_20 (Length: 243)
Name: NF4296_low_20
Description: NF4296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4296_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 128 - 238
Target Start/End: Original strand, 39106985 - 39107094
Alignment:
| Q |
128 |
gagatggttgaatgctaataagattttttcttttgaccaaatattttatttaggaaattaaataaaatcttaaaagttctacttcatatagctttctctt |
227 |
Q |
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| T |
39106985 |
gagatggttgaatgctaataagattttatcttttgaccaaatttttt-tttaggaaattaaataaaatcttaaaagttctacttaatatagctttttctt |
39107083 |
T |
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| Q |
228 |
ttccttttcat |
238 |
Q |
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||||||||||| |
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| T |
39107084 |
ttccttttcat |
39107094 |
T |
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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 35
Target Start/End: Original strand, 39106864 - 39106895
Alignment:
| Q |
4 |
cttcaaattttacatatatacgtatatattat |
35 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
39106864 |
cttcaaattttacatatatacgtatatattat |
39106895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 194
Target Start/End: Complemental strand, 3627560 - 3627532
Alignment:
| Q |
166 |
aaatattttatttaggaaattaaataaaa |
194 |
Q |
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| T |
3627560 |
aaatattttatttaggaaattaaataaaa |
3627532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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