View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4296_low_21 (Length: 242)
Name: NF4296_low_21
Description: NF4296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4296_low_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 11141308 - 11141059
Alignment:
| Q |
1 |
accatatgatttttgaaaacgacctgtcaaaccaatcactagttcaaagtggttggtttgagtagtagtttgatccaatgaaacgtacttggtcacaatt |
100 |
Q |
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| T |
11141308 |
accatatgaattttgaaaacgacctgtcaaaccaatcactagttcaaagtggttggtttgagtagcagtttgatccaatgaaacgtacttggtcacaatt |
11141209 |
T |
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| Q |
101 |
cagttaaacaagaaaaaactgaatttacatctaatgttggttcatcatacaatatgttgcattatatggaatgtttattcatagt------ttttctatc |
194 |
Q |
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| T |
11141208 |
cagttaaacaagaaaaaactgaatttacatctaatgttggttcatcatacaatatggtgcattatatggaaagtttattcatagtttttatttttctatc |
11141109 |
T |
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| Q |
195 |
ttaaatttg-ggtagttgatgtgggttatcaacacaca-cctcacactct |
242 |
Q |
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| T |
11141108 |
ttaaatttgagctagttgatgtgggttctcaacacacaccctcacactct |
11141059 |
T |
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