View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4296_low_22 (Length: 240)
Name: NF4296_low_22
Description: NF4296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4296_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 2 - 154
Target Start/End: Complemental strand, 48163295 - 48163143
Alignment:
| Q |
2 |
aaaaagttcataaattgactaaggattgaatccataaaaggttagactcacgcatcgacgacattgtgcatcaataagaagtgtgtttcacatttacttt |
101 |
Q |
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| T |
48163295 |
aaaaagttcataaattgactaaggattgaatccataaaaggttggactcacacatcgatgacattgttcatcaataagaagagtgtttcatatttagttt |
48163196 |
T |
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| Q |
102 |
ttgaaagtgtcttgaacataaatgaaatacttatatttgatgtctaacattgt |
154 |
Q |
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| T |
48163195 |
ttgaaaatatcttgaacataaatgagatacttatatttgatgtctaacattgt |
48163143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 48163122 - 48163079
Alignment:
| Q |
179 |
gaataagcaaaaaagaattatattaccaaaaggaacaaagccta |
222 |
Q |
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| T |
48163122 |
gaataagcaaaaaagaattatattaccaaaaggaacaaagccta |
48163079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 14545611 - 14545579
Alignment:
| Q |
183 |
aagcaaaaaagaattatattaccaaaaggaaca |
215 |
Q |
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| T |
14545611 |
aagcaaaaatgaattatattaccaaaaggaaca |
14545579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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