View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4296_low_25 (Length: 235)
Name: NF4296_low_25
Description: NF4296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4296_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 110 - 221
Target Start/End: Complemental strand, 17224013 - 17223902
Alignment:
| Q |
110 |
atcaaatataaattccatgattggaatatgccacctctaggccaaaaaattcatcataaaactaaaatacaagatagagatttcattctaggaatctcat |
209 |
Q |
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| T |
17224013 |
atcaaatataaattccatgattggaatatgccacctctaggccaaaaaattcatcataaaactaaaatacaagatagagatttcattctaggaatctcat |
17223914 |
T |
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| Q |
210 |
aaatggagtttc |
221 |
Q |
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|||||||||||| |
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| T |
17223913 |
aaatggagtttc |
17223902 |
T |
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Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 17224494 - 17224419
Alignment:
| Q |
1 |
aattgagagcaatctaagtattccttctcgcactttattgtgaacaaaagggaaatctatctatttcaaggtgctt |
76 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
17224494 |
aattgagagcaatctaagtattccttctcgcactttattgcgaacaaaagggaaatctatctatttcaaggtgctt |
17224419 |
T |
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