View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4296_low_29 (Length: 222)
Name: NF4296_low_29
Description: NF4296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4296_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 35444428 - 35444557
Alignment:
| Q |
1 |
aaagtcataatgtgaagtaaaacgtgcagctaatccgatcatcatgcgaagtaaaataaagtgcagttaatccactcgaaaaacatataggttggagagc |
100 |
Q |
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| T |
35444428 |
aaagtcataatgtgaagtaaaacgtgcagctaatccgatcatcatgtgaagtaaaataaagtgcagttaatccactcgaaaaacatataggttggagagc |
35444527 |
T |
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| Q |
101 |
gtataaggtgcattaccatgttattcaata |
130 |
Q |
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| T |
35444528 |
gtataaggtgcattactatgttatttaata |
35444557 |
T |
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Target: chr7; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 35445668 - 35445746
Alignment:
| Q |
122 |
tattcaataatcataatcaattttctccaaaaatgttacagtaataaaaatcacaatacaaatgttcaaataagtagtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35445668 |
tattcaataatcataatcaattttctccaaaaatgttacagtaataaaaatcacaatacaaatgttcaaataagtagtt |
35445746 |
T |
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