View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4296_low_4 (Length: 483)
Name: NF4296_low_4
Description: NF4296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4296_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 1e-82; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 65 - 237
Target Start/End: Original strand, 39106205 - 39106379
Alignment:
| Q |
65 |
tatctaccactttccattccaccaacac--gacacaaaggacaaccacatatatgataggcctacgtattctcataattttatttcaaccacattaggta |
162 |
Q |
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| T |
39106205 |
tatctaccactttccattccaccaacacatgacacaaaggacaaccacatatatgatagacctacgtattctcataattttatttcaaccacattaggta |
39106304 |
T |
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| Q |
163 |
tgatattaatctttcctttaataaggattgcgacctaatcctagcactgcacaacaaaatttttgctgtcactat |
237 |
Q |
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| T |
39106305 |
tgatattaatctttcctttaataaggattgcgacctaatcctagcactgcacaacaaattttttgctgtcactat |
39106379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 411 - 472
Target Start/End: Original strand, 39106547 - 39106608
Alignment:
| Q |
411 |
gacaacatataaaaatagaaaaagaaacatctaatatgagaccaacggaatagaacattcat |
472 |
Q |
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| T |
39106547 |
gacaacatataaaaatagaaaaagaaacatctaatatgagacgaacggaatagaacattcat |
39106608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 39106438 - 39106479
Alignment:
| Q |
296 |
catgttcactacactaatagtgatggcaaagatgtttgtaca |
337 |
Q |
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| T |
39106438 |
catgttcactacactaatagtgatggcaaagatgtttgtaca |
39106479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 39106174 - 39106209
Alignment:
| Q |
20 |
tcgtgctcgtggtaactataagtcatgggtgtatct |
55 |
Q |
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| T |
39106174 |
tcgtgctcgtggtaactataagtcatgggtgtatct |
39106209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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