View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4296_low_9 (Length: 342)
Name: NF4296_low_9
Description: NF4296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4296_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 332
Target Start/End: Original strand, 33178111 - 33178428
Alignment:
| Q |
16 |
caataatttcttgatgatggggctaaaactaatttataagggctaaataaaacattaagagcctgcatgtatatgacaaaatccatgttgtagtccaaag |
115 |
Q |
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| T |
33178111 |
caataatttcttgatgatggggctaaaactaatttataagggctaaataaaacattaagagcctgcatgtatatgacaaaatccatgttgtagtccaaag |
33178210 |
T |
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| Q |
116 |
tattttacaaaacgaggttatagtgacaaccgaatcttttgtttgaataataatataagtgattgtgcaaattaaaagatctatttcagatttgtggatg |
215 |
Q |
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| T |
33178211 |
tattttacaaaacgaggttatagtgacaaccgaatcttttgtttgaataataatataagtgattgtgcaaattaaaagatctatttcagatttgtggatg |
33178310 |
T |
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| Q |
216 |
gaggaacataaaataagttaagg-nnnnnnnnnnacaaggaataagttatggttattctgcaccacttttactttaatccctttcttactctccacactt |
314 |
Q |
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| T |
33178311 |
gaggaacataaaataagttaaggttttttattttacaaggaataagttaaggttattctgcacaactttcactttaatccgtttcttactctccacactt |
33178410 |
T |
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| Q |
315 |
accgtaccatgatgatgt |
332 |
Q |
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|||||||||||||||||| |
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| T |
33178411 |
accgtaccatgatgatgt |
33178428 |
T |
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