View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4297_high_16 (Length: 267)

Name: NF4297_high_16
Description: NF4297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4297_high_16
NF4297_high_16
[»] chr5 (8 HSPs)
chr5 (13-255)||(40277769-40278011)
chr5 (190-255)||(40457318-40457383)
chr5 (185-240)||(40597583-40597638)
chr5 (185-255)||(40377095-40377165)
chr5 (190-255)||(40362427-40362492)
chr5 (190-255)||(40406460-40406525)
chr5 (83-255)||(40333960-40334132)
chr5 (83-255)||(40387238-40387410)
[»] chr2 (1 HSPs)
chr2 (78-114)||(17650616-17650652)


Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 40277769 - 40278011
Alignment:
Q  13 tgaaccaatagagaaatggaaagtattgctagacagtttgaaactttcgttaactaaataccaaattttcctcagttttagagggatagatacccgcgac 112  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40277769 tgaaccaatagagaaatggaaagtattgctagacagtttgaaacattcgttaactaaataccaaattttcctcagttttagagggatagatacccgcgac 40277868  T
Q  113 acatttacaggttctctttatcatgctttagaccaaatggaattcacaaccttctttgatggtgatggcctacacactggagaccaaatttcaccaactc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40277869 acatttacaggttctctttatcatgctttagaccaaatggaattcacaaccttctttgatggtgatggcctacacactggagaccaaatttcaccaactc 40277968  T
Q  213 ttttaaatgcaattgaagcagcaaggctttcaattgttgtttt 255  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  40277969 ttttaaattcaattgaagcagcaaggctttcaattgttgtttt 40278011  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 255
Target Start/End: Complemental strand, 40457383 - 40457318
Alignment:
Q  190 tggagaccaaatttcaccaactcttttaaatgcaattgaagcagcaaggctttcaattgttgtttt 255  Q
    |||| |||||||||||| |||||||||||| |||||||||  | ||||||| ||||||||||||||    
T  40457383 tggaaaccaaatttcacaaactcttttaaaagcaattgaaaaatcaaggctctcaattgttgtttt 40457318  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 40597638 - 40597583
Alignment:
Q  185 cacactggagaccaaatttcaccaactcttttaaatgcaattgaagcagcaaggct 240  Q
    |||||||||||| |||||||||| |||||| ||||||||||||||| | |||||||    
T  40597638 cacactggagacaaaatttcacccactcttctaaatgcaattgaagaatcaaggct 40597583  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 255
Target Start/End: Original strand, 40377095 - 40377165
Alignment:
Q  185 cacactggagaccaaatttcaccaactcttttaaatgcaattgaagcagcaaggctttcaattgttgtttt 255  Q
    ||||||||||||| ||||||||   |||||  |||||||||||||||| |||| ||||||||| |||||||    
T  40377095 cacactggagaccgaatttcacattctcttcgaaatgcaattgaagcaacaagactttcaattattgtttt 40377165  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 40362427 - 40362492
Alignment:
Q  190 tggagaccaaatttcaccaactcttttaaatgcaattgaagcagcaaggctttcaattgttgtttt 255  Q
    |||| |||||||||||| ||||||  | || |||||||||  | ||||||||||||||||||||||    
T  40362427 tggaaaccaaatttcacaaactctactcaaagcaattgaaaaatcaaggctttcaattgttgtttt 40362492  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 40406460 - 40406525
Alignment:
Q  190 tggagaccaaatttcaccaactcttttaaatgcaattgaagcagcaaggctttcaattgttgtttt 255  Q
    |||| |||||||||||| ||||||| |  | |||||||||  | ||||||||||||||||||||||    
T  40406460 tggaaaccaaatttcacaaactcttctcgaagcaattgaaaaatcaaggctttcaattgttgtttt 40406525  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 255
Target Start/End: Original strand, 40333960 - 40334132
Alignment:
Q  83 ctcagttttagagggatagatacccgcgacacatttacaggttctctttatcatgctttagaccaaatggaattcacaaccttctttgatggtgatggcc 182  Q
    |||||||||||||||  |||||| ||| || | |||||||||  ||||| ||| ||||||  ||||  || |||||  || ||| | |||| ||| || |    
T  40333960 ctcagttttagaggggaagatactcgctactcttttacaggtagtctttttcaagctttatcccaagggggattcaagactttcatggatgatgaaggac 40334059  T
Q  183 tacacactggagaccaaatttcaccaactcttttaaatgcaattgaagcagcaaggctttcaattgttgtttt 255  Q
    | |||||||| |||| | |||||||   ||||  |||||||||||||||| |||| ||||| ||| |||||||    
T  40334060 tgcacactggggaccgagtttcaccttgtcttagaaatgcaattgaagcatcaagactttcgattattgtttt 40334132  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 255
Target Start/End: Original strand, 40387238 - 40387410
Alignment:
Q  83 ctcagttttagagggatagatacccgcgacacatttacaggttctctttatcatgctttagaccaaatggaattcacaaccttctttgatggtgatggcc 182  Q
    |||||||||||||||  |||||| ||| || | |||||||||  ||||| ||| ||||||  ||||  || |||||  || ||| | |||| ||| || |    
T  40387238 ctcagttttagaggggaagatactcgctactcttttacaggtagtctttttcaagctttatcccaagggggattcaagactttcatggatgatgaaggac 40387337  T
Q  183 tacacactggagaccaaatttcaccaactcttttaaatgcaattgaagcagcaaggctttcaattgttgtttt 255  Q
    | |||||||| |||| | |||||||   ||||  |||||||||||||||| |||| ||||| ||| |||||||    
T  40387338 tgcacactggggaccgagtttcaccttgtcttagaaatgcaattgaagcatcaagactttcgattattgtttt 40387410  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 17650616 - 17650652
Alignment:
Q  78 ttttcctcagttttagagggatagatacccgcgacac 114  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  17650616 ttttcctcagttttagaggcatagatacccgcaacac 17650652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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