View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4297_high_2 (Length: 502)
Name: NF4297_high_2
Description: NF4297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4297_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 35156353 - 35156579
Alignment:
| Q |
17 |
agctatatcatttgaacacagttactcataccaaacttcattcaggacatttatcaaacaattggcagatccaaaacgaaataatcaatttcacactaca |
116 |
Q |
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| T |
35156353 |
agctatatcatttgaacacaattacccataccaaacttcattcaggacatttatcaaacaataggcagatccaaaacgaaataataaatttcacactaca |
35156452 |
T |
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| Q |
117 |
cataactcattctcacaaaaactcctttcaacacattcatcaaatagttagcagatccaaaacccaacactcaatttcacacattcaacctcactaacat |
216 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
35156453 |
cataactcattctcac-aaaactcctttcaacacattcatcaaatagttagcagatccaaaaccaaacactcaatttcacacactcaacctcactaacat |
35156551 |
T |
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| Q |
217 |
acaacaacacaagtcagatctgaatcaa |
244 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
35156552 |
acaacaacacaagtcagatctgaatcaa |
35156579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 284 - 492
Target Start/End: Original strand, 35156572 - 35156780
Alignment:
| Q |
284 |
tgaaacaacacaatcccagattattaaatattaaaaagtaaacgaaaataagcagatctaggttttcaaaaaacaaaccttgctcttggtaacagagtca |
383 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35156572 |
tgaatcaacacaaccccagattattaaatattaaaaagtaaacgaaaataagcagatctaggttttgaaaaaacaaaccttgctcttggtaacagagtca |
35156671 |
T |
|
| Q |
384 |
ttgacattaatagcagggaacaaaagagttccactagcttgcatctgataaagcctcttaacaccagtagtagtctcttcagatacaccaacaagtctat |
483 |
Q |
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| T |
35156672 |
ttgacattaatagcagggaacaaaagagttccactagcttgcatctgataaagcctcttaacaccagtagtagtctcttcagaaacaccaacaagtctat |
35156771 |
T |
|
| Q |
484 |
ccttcatct |
492 |
Q |
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| T |
35156772 |
ccttcatct |
35156780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 360 - 492
Target Start/End: Complemental strand, 38077923 - 38077791
Alignment:
| Q |
360 |
accttgctcttggtaacagagtcattgacattaatagcagggaacaaaagagttccactagcttgcatctgataaagcctcttaacaccagtagtagtct |
459 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||| || ||| | ||||||||||| |||||||||||||||||||| ||||| | |
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| T |
38077923 |
accttgctcttggtaacagagtcattgacattgatagcagggaacaaaagggtaccagttgcttgcatctggtaaagcctcttaacaccagtggtagttt |
38077824 |
T |
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| Q |
460 |
cttcagatacaccaacaagtctatccttcatct |
492 |
Q |
| |
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||||||| |||||||||| |||| |||||||| |
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| T |
38077823 |
cttcagaaacaccaacaattctagtcttcatct |
38077791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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