View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4297_high_24 (Length: 240)
Name: NF4297_high_24
Description: NF4297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4297_high_24 |
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| [»] scaffold0205 (1 HSPs) |
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Alignment Details
Target: scaffold0205 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: scaffold0205
Description:
Target: scaffold0205; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 3 - 240
Target Start/End: Original strand, 20457 - 20694
Alignment:
| Q |
3 |
cagatattaatcttgtttcactgatgactatttctaggatgaaacaggtgtatagtaacatattaatgatgtttaggaaccatcactaagtatgatcaac |
102 |
Q |
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| T |
20457 |
cagatattaatcttgtttcactgatgactatttataggatgaaacaggtgtatagtaacatattaatgatgtttaggaaccatcactaagtatgatcaac |
20556 |
T |
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| Q |
103 |
tttcaacaagccatgctcgatattgatattacctcatttgagttatacaatttagcaatctttgcaagctcctcatggttcagatactcttccttctttc |
202 |
Q |
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| T |
20557 |
tttcaacaagccatgctcgatattgatattacctcatttgagttatacaatttagaaatctttgcaagctcctcatggttcagatactcttccttctttc |
20656 |
T |
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| Q |
203 |
ttgcaagttcttcgtcaatgatccgctgatttactcca |
240 |
Q |
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| T |
20657 |
ttgcaagttcttcgtcaatgatccgctgatttactcca |
20694 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 53349402 - 53349344
Alignment:
| Q |
166 |
gcaagctcctcatggttcagatactcttccttctttcttgcaagttcttcgtcaatgat |
224 |
Q |
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| T |
53349402 |
gcaagctcctcatttttcatatactcttccttcttttttgcaacttctgcctcaatgat |
53349344 |
T |
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