View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4297_high_28 (Length: 230)
Name: NF4297_high_28
Description: NF4297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4297_high_28 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 8e-88; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 4390988 - 4390782
Alignment:
| Q |
12 |
aaaataaataccttaattatttctcgcgctacaatttcccgcgcgcgacattccagcttcattcatcttctactctgaaactcgttgaatcgtaaaatgg |
111 |
Q |
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| T |
4390988 |
aaaataaataccttatatatttcccgcgctacaatttcccgcgcgcgacattccagcttcattcatcttctactctgaaactcgttgaatcgtaaaatcg |
4390889 |
T |
|
| Q |
112 |
ctccgagtttacgatcttacacaaacgggatttttgacccgatttcaaaacccgtttcttttacagtttaaaaacaaatcctaaccctaattgctctttc |
211 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| | |||||||||| |||||||| |
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| T |
4390888 |
ctccgagtttacgatcttacacaaacgggttttttgacccgatttcaaaacccgtttcttttacag-ttaaatacaaaccgtaaccctaatcgctctttc |
4390790 |
T |
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| Q |
212 |
accttcat |
219 |
Q |
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|||||||| |
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| T |
4390789 |
accttcat |
4390782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 90 - 219
Target Start/End: Complemental strand, 4378341 - 4378213
Alignment:
| Q |
90 |
aactcgttgaatcgtaaaatggctccgagtttacgatcttacacaaacgggatttttgacccgatttcaaaacccgtttcttttacagtttaaaaacaaa |
189 |
Q |
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|||| ||||||| ||||||| ||||||| ||||||||||| |||||||||| || ||||||||||| ||||||||| || |||||| |||||| ||||| |
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| T |
4378341 |
aactagttgaattgtaaaatcgctccgactttacgatcttgcacaaacgggtttattgacccgattgcaaaacccgatt-ttttacgttttaaatacaaa |
4378243 |
T |
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| Q |
190 |
tcctaaccctaattgctctttcaccttcat |
219 |
Q |
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| T |
4378242 |
gcctaaccctaatcactctttcaccttcat |
4378213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 90 - 219
Target Start/End: Complemental strand, 4385926 - 4385802
Alignment:
| Q |
90 |
aactcgttgaatcgtaaaatggctccgagtttacgatcttacacaaacgggatttttgacccgatttcaaaacccgtttcttttacagtttaaaaacaaa |
189 |
Q |
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|||| ||||||| ||||||| |||||||||||| |||||||||| | | | ||||||||||| ||||||||| || |||||| ||||||| ||||| |
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| T |
4385926 |
aactagttgaattgtaaaatcgctccgagtttatgatcttacac----gtgtctattgacccgattgcaaaacccgatt-ttttacggtttaaatacaaa |
4385832 |
T |
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| Q |
190 |
tcctaaccctaattgctctttcaccttcat |
219 |
Q |
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|||||||||||| |||||||||||||||| |
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| T |
4385831 |
ccctaaccctaatcgctctttcaccttcat |
4385802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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